Name: wanguard_s1
Variants: 9175
Novel Variants: 236 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 9175 5881 0/1 3256 1/1 38 1/2
Total Gene-associated SNVs 9175 5881 0/1 3256 1/1 38 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION23
CODON_CHANGE_PLUS_CODON_INSERTION29
CODON_DELETION8
CODON_INSERTION13
FRAME_SHIFT21
FRAME_SHIFT+SPLICE_SITE_REGION8
FRAME_SHIFT+START_LOST1
FRAME_SHIFT+STOP_LOST1
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0079.2:SP1]2
MOTIF[MA0139.1:CTCF]3
MOTIF[MA0162.1:Egr1]2
NON_SYNONYMOUS_CODING3020
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION72
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS118
SPLICE_SITE_REGION4
SPLICE_SITE_REGION+SYNONYMOUS_CODING60
START_GAINED11
START_LOST2
STOP_GAINED17
STOP_LOST7
SYNONYMOUS_CODING3756
SYNONYMOUS_STOP3
None0

Type Total Variants
None0

Type Total Variants
HIGH178
LOW3838
MODERATE3165
MODIFIER5
None0

Type Total Variants
LowDP207
LowGQ15
LowGQ;LowDP64
LowGQ;LowGQX2
LowGQ;LowGQX;LowDP31
LowGQ;LowGQX;R81
LowGQ;LowGQX;SB3
LowGQ;LowGQX;SB;LowDP34
LowGQ;R83
LowGQ;R8;LowDP1
LowGQ;SB5
LowGQ;SB;LowDP69
LowVariantFreq65
LowVariantFreq;LowDP1
LowVariantFreq;LowGQ;LowGQX;SB1
LowVariantFreq;R830
LowVariantFreq;R8;SB1
LowVariantFreq;SB154
LowVariantFreq;SB;LowDP10
PASS7868
R8174
R8;LowDP8
R8;SB7
R8;SB;LowDP4
SB265
SB;LowDP152

Quality Value
Min10.0
Average1727.74139291554
Max17569.37

Read Depth Value
Min1
Average96.37514986376021
Max528

Type Total Variants
None0

Chromossome Total Variants
1911
10353
11537
12484
13189
14241
15309
16471
17493
18169
19572
2683
20180
21107
22258
3415
4378
5418
6741
7447
8315
9346
X152
Y6