Name: combined sample_38.variant2
Variants: 159011
Novel Variants: 5497 (Not in latest DbSNP Build)

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION126
CODON_CHANGE_PLUS_CODON_INSERTION110
CODON_DELETION56
CODON_DELETION+SPLICE_SITE_REGION2
CODON_INSERTION108
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT385
FRAME_SHIFT+SPLICE_SITE_REGION45
FRAME_SHIFT+START_LOST5
FRAME_SHIFT+START_LOST+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_GAINED7
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_LOST3
GENE_FUSION1
GENE_FUSION_REVERESE1
MOTIF_DELETED8
MOTIF[MA0003.1:Ap2alpha]47
MOTIF[MA0014.1:Pax5]5
MOTIF[MA0016.1:RXRA]4
MOTIF[MA0024.1:E2F1]11
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]3
MOTIF[MA0058.1:Max]21
MOTIF[MA0059.1:Cmyc]6
MOTIF[MA0062.1:Gabp]8
MOTIF[MA0062.2:Gabp]56
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]13
MOTIF[MA0079.2:SP1]55
MOTIF[MA0080.1:PU1]4
MOTIF[MA0080.2:PU1]8
MOTIF[MA0093.1:USF1]8
MOTIF[MA0095.1:Yy1]20
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]6
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0114.1:HNF4A]13
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]11
MOTIF[MA0139.1:CTCF]106
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]23
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]8
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]70
MOTIF[MA0239.1:Pax5]1
NON_SYNONYMOUS_CODING12066
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION245
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS259
SPLICE_SITE_REGION128
SPLICE_SITE_REGION+SYNONYMOUS_CODING268
START_GAINED644
START_LOST17
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED131
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST29
STOP_LOST+SPLICE_SITE_REGION5
SYNONYMOUS_CODING12079
SYNONYMOUS_STOP11
TRANSCRIPT7
None0

Type Total Variants
2421
MISSENSE12364
NONSENSE134
SILENT12358
None0

Type Total Variants
HIGH896
LOW13403
MODERATE12714
MODIFIER264
None0

Type Total Variants
DRAGENHardINDEL91
DRAGENHardSNP1272
PASS157648

Quality Value
Min30.01
Average1584.19175176561
Max160266.0

Read Depth Value
Min0
Average89.48714868782663
Max5064

Type Total Variants
None0

Chromossome Total Variants
115504
106667
119653
128609
132720
145254
155400
166816
178787
182980
1910478
210803
203679
212298
223781
39006
46910
57106
69510
78481
85813
96339
X2220
Y197