Name: pm-286 final
Variants: 90215
Novel Variants: 991 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 90215 55511 0/1 34560 1/1 144 1/2
Total Gene-associated SNVs 90215 55511 0/1 34560 1/1 144 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION121
CODON_CHANGE_PLUS_CODON_INSERTION81
CODON_DELETION40
CODON_INSERTION65
FRAME_SHIFT240
FRAME_SHIFT+SPLICE_SITE_REGION38
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST3
GENE_FUSION_REVERESE2
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]13
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0058.1:Max]10
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]17
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]15
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]2
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]6
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]6
MOTIF[MA0138.2:Nrsf]3
MOTIF[MA0139.1:CTCF]53
MOTIF[MA0147.1:Cmyc]6
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]2
MOTIF[MA0159.1:RXR]3
MOTIF[MA0162.1:Egr1]22
NON_SYNONYMOUS_CODING10537
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION233
PROTEIN_PROTEIN_INTERACTION_LOCUS6
PROTEIN_STRUCTURAL_INTERACTION_LOCUS249
SPLICE_SITE_REGION32
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING253
START_GAINED223
START_LOST10
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED95
STOP_LOST21
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11247
SYNONYMOUS_STOP9
TRANSCRIPT1
None0

Type Total Variants
None0

Type Total Variants
HIGH675
LOW11857
MODERATE11080
MODIFIER90
None0

Type Total Variants
MG_INDEL_Filter67
MG_SNP_Filter1634
PASS88514

Quality Value
Min30.04
Average802.99330067029
Max20440.77

Read Depth Value
Min0
Average38.10773153023333
Max747

Type Total Variants
None0

Chromossome Total Variants
18578
103978
115992
124893
131815
143322
152982
163910
175037
181513
195992
26295
202417
211346
222180
34943
43519
53909
63896
74899
83439
93778
X1556
Y26