Name: rm-274 final
Variants: 91378
Novel Variants: 1209 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 91378 55657 0/1 35543 1/1 178 1/2
Total Gene-associated SNVs 91378 55657 0/1 35543 1/1 178 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION137
CODON_CHANGE_PLUS_CODON_INSERTION80
CODON_DELETION47
CODON_INSERTION70
FRAME_SHIFT232
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_LOST2
GENE_FUSION1
MOTIF_DELETED5
MOTIF[MA0003.1:Ap2alpha]16
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]3
MOTIF[MA0058.1:Max]12
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]5
MOTIF[MA0062.2:Gabp]25
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]11
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]2
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]5
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]55
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0154.1:EBF]2
MOTIF[MA0162.1:Egr1]27
NON_SYNONYMOUS_CODING10527
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION215
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS235
SPLICE_SITE_REGION33
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING235
START_GAINED219
START_LOST16
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED85
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST28
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING11390
SYNONYMOUS_STOP10
None0

Type Total Variants
None0

Type Total Variants
HIGH659
LOW11988
MODERATE11079
MODIFIER104
None0

Type Total Variants
MG_INDEL_Filter72
MG_SNP_Filter1733
PASS89573

Quality Value
Min30.41
Average873.063980279505
Max17021.77

Read Depth Value
Min1
Average41.02209503381558
Max667

Type Total Variants
None0

Chromossome Total Variants
18840
104020
115874
124835
131769
143195
153187
164143
175036
181565
195845
26745
202472
211438
222184
34862
43851
53868
63997
75089
83329
94035
X1168
Y31