Name: jp5186_chip
Variants: 160364
Novel Variants: 31 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 160364 102480 0/1 1 0/2 57883 1/1
Total Gene-associated SNVs 160364 102480 0/1 1 0/2 57883 1/1

Type Total Variants
15
CODON_CHANGE_PLUS_CODON_DELETION5
CODON_CHANGE_PLUS_CODON_INSERTION1
CODON_DELETION2
CODON_INSERTION1
FRAME_SHIFT7
FRAME_SHIFT+SPLICE_SITE_REGION2
MOTIF[MA0003.1:Ap2alpha]4
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]4
MOTIF[MA0047.1:FOXA2]2
MOTIF[MA0047.2:FOXA2]6
MOTIF[MA0058.1:Max]10
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.2:Gabp]2
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.2:SP1]5
MOTIF[MA0080.2:PU1]3
MOTIF[MA0083.1:Srf]2
MOTIF[MA0093.1:USF1]13
MOTIF[MA0095.1:Yy1]4
MOTIF[MA0099.1:Cfos]9
MOTIF[MA0099.2:AP1]8
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0114.1:HNF4A]9
MOTIF[MA0138.2:Nrsf]9
MOTIF[MA0139.1:CTCF]51
MOTIF[MA0140.1:Tal1]3
MOTIF[MA0147.1:Cmyc]1
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]2
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]2
NON_SYNONYMOUS_CODING2496
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION78
PROTEIN_PROTEIN_INTERACTION_LOCUS1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS48
SPLICE_SITE_REGION14
SPLICE_SITE_REGION+SYNONYMOUS_CODING60
START_GAINED50
START_LOST6
STOP_GAINED17
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST4
SYNONYMOUS_CODING1203
None0

Type Total Variants
304
MISSENSE2584
NONSENSE18
SILENT1263
None0

Type Total Variants
HIGH86
LOW1384
MODERATE2583
MODIFIER116
None0

Type Total Variants
PASS160364

Quality Value
Min0.0
Average0.0342907385697538
Max618.0

Read Depth Value
Min0
Average0.0006235813524232372
Max10

Type Total Variants
None0

Chromossome Total Variants
112210
108023
117901
127537
135884
145160
154928
165169
174544
184852
193463
212721
203826
212255
222107
310827
410073
58953
611971
78624
88292
96860
M15
X3988
Y181