Name: l-322-filtered-snps-indels
Variants: 288195
Novel Variants: 8187 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 288195 101218 0/1 186760 1/1 217 1/2
Total Gene-associated SNVs 288195 101218 0/1 186760 1/1 217 1/2

Type Total Variants
45
CODON_CHANGE_PLUS_CODON_DELETION137
CODON_CHANGE_PLUS_CODON_INSERTION82
CODON_DELETION47
CODON_INSERTION69
FRAME_SHIFT250
FRAME_SHIFT+SPLICE_SITE_REGION39
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST5
GENE_FUSION1
GENE_FUSION_REVERESE1
MOTIF_DELETED6
MOTIF[MA0003.1:Ap2alpha]31
MOTIF[MA0005.1:MEF2C]1
MOTIF[MA0014.1:Pax5]9
MOTIF[MA0016.1:RXRA]4
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.2:Gata1]2
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]4
MOTIF[MA0058.1:Max]27
MOTIF[MA0059.1:Cmyc]7
MOTIF[MA0062.1:Gabp]13
MOTIF[MA0062.2:Gabp]31
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]9
MOTIF[MA0079.2:SP1]35
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]3
MOTIF[MA0093.1:USF1]19
MOTIF[MA0095.1:Yy1]15
MOTIF[MA0099.1:Cfos]6
MOTIF[MA0099.2:AP1]9
MOTIF[MA0114.1:HNF4A]16
MOTIF[MA0138.1:Nrsf]3
MOTIF[MA0138.2:Nrsf]11
MOTIF[MA0139.1:CTCF]194
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]16
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]12
MOTIF[MA0159.1:RXR]3
MOTIF[MA0162.1:Egr1]31
MOTIF[MA0239.1:Pax5]1
NON_SYNONYMOUS_CODING11218
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION221
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS241
SPLICE_SITE_REGION39
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING238
SPLICE_SITE_REGION+SYNONYMOUS_STOP1
START_GAINED318
START_LOST14
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION2
STOP_GAINED106
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST23
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11516
SYNONYMOUS_STOP16
TRANSCRIPT3
None0

Type Total Variants
1824
MISSENSE11480
NONSENSE107
SILENT11771
None0

Type Total Variants
HIGH698
LOW12342
MODERATE11777
MODIFIER365
None0

Type Total Variants
LowQual36403
LowQual;my_indel_filter41
LowQual;my_snp_filter1055
my_indel_filter106
my_snp_filter9433
PASS241157

Quality Value
Min20.04
Average374.503820537761
Max28354.77

Read Depth Value
Min0
Average18.93314249032773
Max1044

Type Total Variants
None0
2|21
22
5|52

Chromossome Total Variants
126119
1014992
1116001
1214343
137545
149323
1510333
1612144
1713618
186359
1913391
221800
207460
214658
226851
315553
414703
513297
613391
716489
811989
913044
M45
X3666
Y1081