Name: variant_list
Variants: 409551
Novel Variants: 77974 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 409551 162963 0/1 103 0/2 245232 1/1 1248 1/2 5 2/2
Total Gene-associated SNVs 409551 162963 0/1 103 0/2 245232 1/1 1248 1/2 5 2/2

Type Total Variants
48
CODON_CHANGE_PLUS_CODON_DELETION61
CODON_CHANGE_PLUS_CODON_INSERTION44
CODON_DELETION91
CODON_INSERTION75
FRAME_SHIFT164
FRAME_SHIFT+NON_SYNONYMOUS_CODING10
FRAME_SHIFT+NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION1
FRAME_SHIFT+SPLICE_SITE_REGION44
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST3
FRAME_SHIFT+SYNONYMOUS_CODING3
MOTIF[MA0003.1:Ap2alpha]36
MOTIF[MA0014.1:Pax5]7
MOTIF[MA0016.1:RXRA]5
MOTIF[MA0024.1:E2F1]6
MOTIF[MA0035.1:Gata1]3
MOTIF[MA0035.2:Gata1]4
MOTIF[MA0036.1:Gata2]3
MOTIF[MA0047.2:FOXA2]4
MOTIF[MA0058.1:Max]26
MOTIF[MA0059.1:Cmyc]11
MOTIF[MA0062.1:Gabp]13
MOTIF[MA0062.2:Gabp]40
MOTIF[MA0065.1:PPARG]4
MOTIF[MA0065.2:PPARG]4
MOTIF[MA0079.1:SP1]20
MOTIF[MA0079.2:SP1]61
MOTIF[MA0080.1:PU1]4
MOTIF[MA0080.2:PU1]9
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]21
MOTIF[MA0095.1:Yy1]16
MOTIF[MA0099.1:Cfos]3
MOTIF[MA0099.2:AP1]5
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0114.1:HNF4A]22
MOTIF[MA0138.2:Nrsf]14
MOTIF[MA0139.1:CTCF]204
MOTIF[MA0140.1:Tal1]3
MOTIF[MA0147.1:Cmyc]28
MOTIF[MA0148.1:FOXA1]6
MOTIF[MA0154.1:EBF]9
MOTIF[MA0159.1:RXR]6
MOTIF[MA0162.1:Egr1]67
NON_SYNONYMOUS_CODING11572
NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION1
NON_SYNONYMOUS_CODING+CODON_INSERTION2
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION260
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS261
SPLICE_SITE_REGION88
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+SYNONYMOUS_CODING241
START_GAINED456
START_LOST17
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED109
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST27
STOP_LOST+CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11649
SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION1
SYNONYMOUS_CODING+CODON_DELETION1
SYNONYMOUS_STOP15
TRANSCRIPT4
None0

Type Total Variants
2582
MISSENSE11398
NONSENSE104
SILENT11849
None0

Type Total Variants
HIGH652
LOW12695
MODERATE12112
MODIFIER474
None0

Type Total Variants
.409551

Quality Value
Min0.0
Average212.357981641773
Max58599.3

Read Depth Value
Min2
Average13.135043010516394
Max2172

Type Total Variants
None0
2|22
26
31
51
5|52

Chromossome Total Variants
135120
1020982
1120486
1220171
1310473
1412553
1512371
1617235
1717383
188847
1917203
230741
2010636
218311
228390
324209
422831
519053
622956
721583
816978
917579
M48
X8995
Y4417