Name: hsp108-ii-1-filtered_variants
Variants: 102075
Novel Variants: 1371 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 102075 62116 0/1 39695 1/1 264 1/2
Total Gene-associated SNVs 102075 62116 0/1 39695 1/1 264 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION143
CODON_CHANGE_PLUS_CODON_INSERTION102
CODON_DELETION52
CODON_INSERTION85
FRAME_SHIFT267
FRAME_SHIFT+SPLICE_SITE_REGION41
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST5
GENE_FUSION1
GENE_FUSION_REVERESE2
MOTIF_DELETED8
MOTIF[MA0003.1:Ap2alpha]18
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]9
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]4
MOTIF[MA0062.2:Gabp]20
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]10
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]4
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]5
MOTIF[MA0095.1:Yy1]9
MOTIF[MA0099.2:AP1]4
MOTIF[MA0114.1:HNF4A]5
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]75
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]4
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0162.1:Egr1]22
NON_SYNONYMOUS_CODING11753
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION259
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS266
SPLICE_SITE_REGION25
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING264
START_GAINED257
START_LOST14
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_DELETION1
STOP_GAINED122
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST25
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11934
SYNONYMOUS_STOP12
TRANSCRIPT4
None0

Type Total Variants
None0

Type Total Variants
HIGH762
LOW12602
MODERATE12399
MODIFIER118
None0

Type Total Variants
HKP_INDEL_FILTER118
HKP_SNP_FILTER9784
PASS92173

Quality Value
Min30.07
Average1042.95297036544
Max65310.77

Read Depth Value
Min1
Average51.88015674748959
Max2215

Type Total Variants
None0

Chromossome Total Variants
110091
104301
116702
125619
131928
143429
153689
164889
175866
181627
197001
26948
202414
211426
222356
35356
43910
54267
65807
75310
83581
94038
MT34
X1400
Y86