Name: ns4-6
Variants: 91168
Novel Variants: 1039 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 91168 55439 0/1 35517 1/1 212 1/2
Total Gene-associated SNVs 91168 55439 0/1 35517 1/1 212 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION137
CODON_CHANGE_PLUS_CODON_INSERTION89
CODON_DELETION50
CODON_INSERTION80
FRAME_SHIFT252
FRAME_SHIFT+SPLICE_SITE_REGION40
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST3
GENE_FUSION_REVERESE2
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]16
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]13
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]4
MOTIF[MA0062.2:Gabp]23
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]14
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]3
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]5
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]58
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]4
MOTIF[MA0154.1:EBF]1
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]14
NON_SYNONYMOUS_CODING10819
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION220
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS261
SPLICE_SITE_REGION28
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING255
START_GAINED214
START_LOST11
START_LOST+CODON_CHANGE_PLUS_CODON_DELETION1
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED100
STOP_LOST27
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11591
SYNONYMOUS_STOP8
TRANSCRIPT1
None0

Type Total Variants
1368
MISSENSE11081
NONSENSE100
SILENT11854
None0

Type Total Variants
HIGH711
LOW12193
MODERATE11398
MODIFIER101
None0

Type Total Variants
MG_INDEL_Filter87
MG_SNP_Filter1791
PASS89290

Quality Value
Min30.19
Average1235.23240764228
Max46093.77

Read Depth Value
Min0
Average62.591918216918216
Max1588

Type Total Variants
None0

Chromossome Total Variants
18930
103935
116066
125028
131796
143356
153108
164015
175156
181495
196307
26500
202225
211387
222241
34688
43623
54036
63963
75244
83269
93660
X1096
Y44