Name: ns2-10 final
Variants: 100186
Novel Variants: 1062 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 100186 59915 0/1 40090 1/1 181 1/2
Total Gene-associated SNVs 100186 59915 0/1 40090 1/1 181 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION138
CODON_CHANGE_PLUS_CODON_INSERTION89
CODON_DELETION49
CODON_INSERTION79
FRAME_SHIFT247
FRAME_SHIFT+SPLICE_SITE_REGION43
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST4
GENE_FUSION1
GENE_FUSION_REVERESE1
MOTIF_DELETED6
MOTIF[MA0003.1:Ap2alpha]17
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]13
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]26
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]8
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]3
MOTIF[MA0093.1:USF1]3
MOTIF[MA0095.1:Yy1]10
MOTIF[MA0099.2:AP1]3
MOTIF[MA0114.1:HNF4A]7
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]77
MOTIF[MA0147.1:Cmyc]5
MOTIF[MA0154.1:EBF]3
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]23
NON_SYNONYMOUS_CODING11226
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION230
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS269
SPLICE_SITE_REGION27
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION2
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING255
START_GAINED225
START_LOST13
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED112
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST26
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11693
SYNONYMOUS_STOP11
TRANSCRIPT1
None0

Type Total Variants
1425
MISSENSE11498
NONSENSE113
SILENT11959
None0

Type Total Variants
HIGH735
LOW12321
MODERATE11816
MODIFIER123
None0

Type Total Variants
MG_INDEL_Filter118
MG_SNP_Filter3595
PASS96473

Quality Value
Min30.04
Average917.791566186828
Max37124.77

Read Depth Value
Min1
Average48.91638552292736
Max1292

Type Total Variants
None0

Chromossome Total Variants
19975
104253
116474
125778
131839
143594
153615
164531
175910
181718
196883
27071
202647
211580
222495
35110
43804
54424
64037
75360
83630
94161
X1220
Y77