Name: ns2-5 filtered variants
Variants: 85894
Novel Variants: 817 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 85894 50342 0/1 35399 1/1 153 1/2
Total Gene-associated SNVs 85894 50342 0/1 35399 1/1 153 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION125
CODON_CHANGE_PLUS_CODON_INSERTION81
CODON_DELETION42
CODON_INSERTION70
FRAME_SHIFT222
FRAME_SHIFT+SPLICE_SITE_REGION39
FRAME_SHIFT+START_LOST6
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_LOST3
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]14
MOTIF[MA0014.1:Pax5]1
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]11
MOTIF[MA0062.1:Gabp]5
MOTIF[MA0062.2:Gabp]23
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]8
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]3
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]6
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]58
MOTIF[MA0147.1:Cmyc]4
MOTIF[MA0162.1:Egr1]14
NON_SYNONYMOUS_CODING10497
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION214
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS263
SPLICE_SITE_REGION28
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING255
START_GAINED195
START_LOST10
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_INSERTION2
STOP_GAINED97
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST29
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11187
SYNONYMOUS_STOP8
TRANSCRIPT1
None0

Type Total Variants
1260
MISSENSE10752
NONSENSE98
SILENT11450
None0

Type Total Variants
HIGH681
LOW11755
MODERATE11032
MODIFIER92
None0

Type Total Variants
MG_INDEL_Filter41
MG_SNP_Filter1448
PASS84405

Quality Value
Min30.29
Average896.28105339203
Max36823.77

Read Depth Value
Min0
Average44.55424127412858
Max1232

Type Total Variants
None0

Chromossome Total Variants
18480
103649
115738
124966
131596
143039
152877
163830
175072
181412
195462
26093
202200
211322
222101
34662
43451
53793
63654
74343
83260
93512
X1359
Y23