Name: ns1-5 final
Variants: 97314
Novel Variants: 1157 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 97314 55197 0/1 41966 1/1 151 1/2
Total Gene-associated SNVs 97314 55197 0/1 41966 1/1 151 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION145
CODON_CHANGE_PLUS_CODON_INSERTION83
CODON_DELETION53
CODON_INSERTION68
FRAME_SHIFT253
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST5
GENE_FUSION_REVERESE2
MOTIF[MA0003.1:Ap2alpha]17
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]4
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]13
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]21
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]17
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]4
MOTIF[MA0095.1:Yy1]7
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]7
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]7
MOTIF[MA0139.1:CTCF]59
MOTIF[MA0147.1:Cmyc]8
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]2
MOTIF[MA0162.1:Egr1]27
NON_SYNONYMOUS_CODING11099
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION239
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS237
SPLICE_SITE_REGION26
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING254
START_GAINED220
START_LOST12
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_DELETION1
STOP_GAINED114
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST23
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING11570
SYNONYMOUS_STOP13
TRANSCRIPT1
None0

Type Total Variants
1365
MISSENSE11378
NONSENSE115
SILENT11837
None0

Type Total Variants
HIGH706
LOW12186
MODERATE11691
MODIFIER112
None0

Type Total Variants
MG_INDEL_Filter80
MG_SNP_Filter3630
PASS93604

Quality Value
Min30.74
Average891.630778819247
Max41775.77

Read Depth Value
Min0
Average46.31142487206363
Max1442

Type Total Variants
None0

Chromossome Total Variants
19881
103936
116426
125500
131830
143568
153478
164724
175662
181542
196176
26981
202585
211287
222559
35164
43841
53990
64074
75140
83610
94114
X1145
Y101