Name: ns1-6
Variants: 86741
Novel Variants: 825 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 86741 50506 0/1 36066 1/1 169 1/2
Total Gene-associated SNVs 86741 50506 0/1 36066 1/1 169 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION125
CODON_CHANGE_PLUS_CODON_INSERTION77
CODON_DELETION48
CODON_INSERTION68
FRAME_SHIFT223
FRAME_SHIFT+SPLICE_SITE_REGION40
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED6
FRAME_SHIFT+STOP_LOST4
GENE_FUSION_REVERESE2
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]14
MOTIF[MA0014.1:Pax5]1
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]9
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]22
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]15
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]2
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]7
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]6
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]7
MOTIF[MA0139.1:CTCF]54
MOTIF[MA0147.1:Cmyc]6
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]1
MOTIF[MA0162.1:Egr1]21
NON_SYNONYMOUS_CODING10506
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION221
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS232
SPLICE_SITE_REGION28
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING242
SPLICE_SITE_REGION+SYNONYMOUS_STOP1
START_GAINED195
START_LOST11
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED80
STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST25
STOP_LOST+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING11251
SYNONYMOUS_STOP8
None0

Type Total Variants
1250
MISSENSE10768
NONSENSE81
SILENT11502
None0

Type Total Variants
HIGH639
LOW11813
MODERATE11047
MODIFIER102
None0

Type Total Variants
MG_INDEL_Filter69
MG_SNP_Filter1580
PASS85092

Quality Value
Min30.74
Average1101.53973276745
Max31258.77

Read Depth Value
Min1
Average54.25638394761416
Max1053

Type Total Variants
None0

Chromossome Total Variants
18591
103683
115918
124782
131613
143161
153039
163900
175193
181336
195624
26117
202354
211094
222154
34806
43580
54059
63757
74782
82543
93615
X1000
Y40