Name: ctr0100487_mex076_alain_mancinas_201814015100_pass
Variants: 33044
Novel Variants: 198 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 33044 20240 0/1 12786 1/1 18 1/2
Total Gene-associated SNVs 33044 20240 0/1 12786 1/1 18 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION102
CODON_CHANGE_PLUS_CODON_INSERTION59
CODON_DELETION32
CODON_INSERTION47
FRAME_SHIFT101
FRAME_SHIFT+SPLICE_SITE_REGION37
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_LOST1
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]6
MOTIF[MA0014.1:Pax5]1
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0058.1:Max]4
MOTIF[MA0062.1:Gabp]2
MOTIF[MA0062.2:Gabp]12
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]4
MOTIF[MA0080.1:PU1]2
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]5
MOTIF[MA0114.1:HNF4A]2
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]7
MOTIF[MA0147.1:Cmyc]2
MOTIF[MA0162.1:Egr1]10
NON_SYNONYMOUS_CODING9483
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION197
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS226
SPLICE_SITE_REGION30
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING235
START_GAINED211
START_LOST10
STOP_GAINED73
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST20
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING10722
SYNONYMOUS_STOP8
TRANSCRIPT1
None0

Type Total Variants
924
MISSENSE9714
NONSENSE74
SILENT10965
None0

Type Total Variants
HIGH482
LOW11250
MODERATE9921
MODIFIER24
None0

Type Total Variants
PASS33044

Quality Value
Min50.77
Average1075.00006657776
Max13922.73

Read Depth Value
Min5
Average59.48771335189444
Max578

Type Total Variants
None0

Chromossome Total Variants
13407
101382
112357
121735
13581
141063
151126
161321
172023
18533
192583
22155
20890
21466
22744
31821
41273
51418
61558
71672
81102
91370
X461
Y3