Name: 09pla02101_s1 genome
Variants: 9947
Novel Variants: 1125 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 9947 194 . 429 0 6037 0/1 3261 1/1 26 1/2
Total Gene-associated SNVs 9947 194 . 429 0 6037 0/1 3261 1/1 26 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION230
CODON_CHANGE_PLUS_CODON_INSERTION16
CODON_DELETION66
CODON_INSERTION13
FRAME_SHIFT29
FRAME_SHIFT+SPLICE_SITE_REGION16
FRAME_SHIFT+STOP_LOST37
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0139.1:CTCF]1
MOTIF[MA0162.1:Egr1]1
NON_SYNONYMOUS_CODING3188
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION84
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS138
SPLICE_SITE_REGION2
SPLICE_SITE_REGION+SYNONYMOUS_CODING79
START_GAINED13
START_LOST4
STOP_GAINED31
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST12
SYNONYMOUS_CODING3798
SYNONYMOUS_STOP2
None0

Type Total Variants
566
MISSENSE3290
NONSENSE32
SILENT3879
None0

Type Total Variants
HIGH270
LOW3896
MODERATE3597
MODIFIER4
None0

Type Total Variants
LowGQ4
LowGQ;LowGQX180
LowGQ;LowGQX;LowMQ;LowQD1
LowGQ;LowGQX;LowMQ;LowQD;SB13
LowGQ;LowGQX;LowMQ;SB3
LowGQ;LowGQX;LowQD;SB6
LowGQ;LowGQX;SB93
LowGQX248
LowGQX;LowMQ;LowQD3
LowGQX;LowMQ;LowQD;SB10
LowGQX;LowQD72
LowGQX;LowQD;SB357
LowGQX;LowQD;SiteConflict2
LowGQX;SB33
LowMQ7
LowMQ;LowQD1
LowMQ;LowQD;SB11
LowMQ;SB3
LowQD123
LowQD;LowGQX1
LowQD;SB136
LowQD;SiteConflict;LowGQX1
PASS8448
SB189
SiteConflict;LowGQX2

Quality Value
Min0.0
Average1361.53553031065
Max21201.49

Read Depth Value
Min0
Average89.45782648034583
Max445

Type Total Variants
None0
41
24
31

Chromossome Total Variants
1982
10383
11661
12522
13171
14268
15359
16431
17470
18159
19567
2726
20200
21147
22266
3421
4400
5456
6816
7527
8394
9412
X205
Y4