Name: 15a02301_s1 genome
Variants: 9653
Novel Variants: 996 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 9653 249 . 308 0 5938 0/1 1 1 3133 1/1 24 1/2
Total Gene-associated SNVs 9653 249 . 308 0 5938 0/1 1 1 3133 1/1 24 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION161
CODON_CHANGE_PLUS_CODON_INSERTION15
CODON_DELETION76
CODON_INSERTION12
FRAME_SHIFT28
FRAME_SHIFT+SPLICE_SITE_REGION15
FRAME_SHIFT+STOP_LOST36
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0079.2:SP1]1
MOTIF[MA0139.1:CTCF]2
NON_SYNONYMOUS_CODING3093
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION81
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS132
SPLICE_SITE_REGION5
SPLICE_SITE_REGION+CODON_DELETION13
SPLICE_SITE_REGION+SYNONYMOUS_CODING68
START_GAINED12
START_LOST4
STOP_GAINED29
STOP_LOST8
SYNONYMOUS_CODING3684
SYNONYMOUS_STOP1
None0

Type Total Variants
513
MISSENSE3186
NONSENSE29
SILENT3753
None0

Type Total Variants
HIGH255
LOW3773
MODERATE3451
MODIFIER2
None0

Type Total Variants
LowGQ2
LowGQ;LowGQX104
LowGQ;LowGQX;LowMQ;LowQD1
LowGQ;LowGQX;LowMQ;LowQD;SB16
LowGQ;LowGQX;LowMQ;SB5
LowGQ;LowGQX;LowQD;SB4
LowGQ;LowGQX;SB61
LowGQX311
LowGQX;LowMQ;LowQD;SB11
LowGQX;LowQD65
LowGQX;LowQD;SB310
LowGQX;SB18
LowMQ1
LowMQ;LowQD1
LowMQ;LowQD;SB15
LowMQ;SB7
LowQD93
LowQD;LowGQX2
LowQD;SB138
LowQD;SiteConflict;LowGQX1
PASS8265
SB222

Quality Value
Min0.0
Average1491.9361908215
Max34840.8

Read Depth Value
Min0
Average92.60116026105874
Max414

Type Total Variants
None0
2|22
22
31

Chromossome Total Variants
1795
10336
11629
12516
13199
14259
15333
16438
17499
18169
19578
2722
20221
21130
22284
3470
4434
5461
6755
7482
8362
9364
X211
Y6