Name: 16hpc01703_s1 genome
Variants: 26942
Novel Variants: 7254 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 26942 454 . 870 0 13177 0/1 2 1 12375 1/1 64 1/2
Total Gene-associated SNVs 26942 454 . 870 0 13177 0/1 2 1 12375 1/1 64 1/2

Type Total Variants
12
CODON_CHANGE_PLUS_CODON_DELETION210
CODON_CHANGE_PLUS_CODON_INSERTION25
CODON_DELETION55
CODON_INSERTION27
FRAME_SHIFT48
FRAME_SHIFT+SPLICE_SITE_REGION16
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST2
MOTIF[MA0003.1:Ap2alpha]2
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0058.1:Max]4
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]1
MOTIF[MA0079.2:SP1]1
MOTIF[MA0095.1:Yy1]5
MOTIF[MA0138.2:Nrsf]2
MOTIF[MA0139.1:CTCF]16
MOTIF[MA0147.1:Cmyc]1
MOTIF[MA0162.1:Egr1]7
NON_SYNONYMOUS_CODING8522
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION218
NON_SYNONYMOUS_START3
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS200
SPLICE_SITE_REGION8
SPLICE_SITE_REGION+SYNONYMOUS_CODING153
START_GAINED45
START_LOST14
STOP_GAINED290
STOP_GAINED+SPLICE_SITE_REGION12
STOP_LOST22
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING6569
SYNONYMOUS_STOP4
None0

Type Total Variants
695
MISSENSE8780
NONSENSE302
SILENT6726
None0

Type Total Variants
HIGH610
LOW6799
MODERATE9057
MODIFIER37
None0

Type Total Variants
IndelConflict;LowGQX2
LowGQ4
LowGQ;LowGQX2379
LowGQ;LowGQX;LowMQ18
LowGQ;LowGQX;LowMQ;LowQD20
LowGQ;LowGQX;LowMQ;LowQD;SB67
LowGQ;LowGQX;LowMQ;SB36
LowGQ;LowGQX;LowQD2
LowGQ;LowGQX;LowQD;SB63
LowGQ;LowGQX;SB5315
LowGQ;LowMQ;LowQD1
LowGQ;LowMQ;SB2
LowGQ;SB1
LowGQX889
LowGQX;IndelConflict7
LowGQX;LowMQ9
LowGQX;LowMQ;LowQD23
LowGQX;LowMQ;LowQD;SB169
LowGQX;LowQD228
LowGQX;LowQD;SB1396
LowGQX;LowQD;SiteConflict3
LowGQX;SB526
LowGQX;SiteConflict1
LowMQ48
LowMQ;LowQD79
LowMQ;LowQD;SB194
LowMQ;SB47
LowQD405
LowQD;LowGQX3
LowQD;SB468
LowQD;SiteConflict;LowGQX1
PASS13597
SB934
SiteConflict;LowGQX5

Quality Value
Min0.0
Average976.212810852995
Max30562.21

Read Depth Value
Min0
Average75.17392918120407
Max2992

Type Total Variants
None0
2|22
23
5|51

Chromossome Total Variants
12560
101086
111831
121420
13395
14809
15795
161312
171650
18398
192032
21714
20613
21328
22638
31455
41187
51112
61819
71321
8826
91095
M12
X519
Y15