Name: 16hpc01702_s1 genome
Variants: 27349
Novel Variants: 7342 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 27349 503 . 992 0 13400 0/1 1 1 12388 1/1 65 1/2
Total Gene-associated SNVs 27349 503 . 992 0 13400 0/1 1 1 12388 1/1 65 1/2

Type Total Variants
19
CODON_CHANGE_PLUS_CODON_DELETION266
CODON_CHANGE_PLUS_CODON_INSERTION24
CODON_DELETION49
CODON_INSERTION18
FRAME_SHIFT52
FRAME_SHIFT+SPLICE_SITE_REGION40
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST36
MOTIF[MA0003.1:Ap2alpha]2
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]2
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0079.2:SP1]1
MOTIF[MA0080.1:PU1]1
MOTIF[MA0095.1:Yy1]4
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]12
MOTIF[MA0147.1:Cmyc]1
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0162.1:Egr1]6
NON_SYNONYMOUS_CODING8580
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION218
NON_SYNONYMOUS_START3
PROTEIN_PROTEIN_INTERACTION_LOCUS8
PROTEIN_STRUCTURAL_INTERACTION_LOCUS205
SPLICE_SITE_REGION10
SPLICE_SITE_REGION+CODON_DELETION4
SPLICE_SITE_REGION+SYNONYMOUS_CODING139
START_GAINED42
START_LOST12
STOP_GAINED293
STOP_GAINED+SPLICE_SITE_REGION9
STOP_LOST16
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING6704
SYNONYMOUS_STOP6
None0

Type Total Variants
809
MISSENSE8830
NONSENSE302
SILENT6849
None0

Type Total Variants
HIGH674
LOW6922
MODERATE9159
MODIFIER35
None0

Type Total Variants
IndelConflict;LowGQX12
LowGQ3
LowGQ;LowGQX2232
LowGQ;LowGQX;LowMQ14
LowGQ;LowGQX;LowMQ;LowQD6
LowGQ;LowGQX;LowMQ;LowQD;SB73
LowGQ;LowGQX;LowMQ;SB8
LowGQ;LowGQX;LowQD1
LowGQ;LowGQX;LowQD;SB66
LowGQ;LowGQX;SB5449
LowGQX934
LowGQX;IndelConflict1
LowGQX;LowMQ2
LowGQX;LowMQ;LowQD18
LowGQX;LowMQ;LowQD;SB171
LowGQX;LowQD206
LowGQX;LowQD;SB1341
LowGQX;LowQD;SiteConflict2
LowGQX;SB546
LowMQ34
LowMQ;LowQD75
LowMQ;LowQD;SB187
LowMQ;SB37
LowQD430
LowQD;IndelConflict;LowGQX1
LowQD;LowGQX4
LowQD;SB532
LowQD;SiteConflict;LowGQX1
PASS13967
SB993
SiteConflict;LowGQX3

Quality Value
Min0.0
Average1046.93939376218
Max44551.07

Read Depth Value
Min0
Average78.8618596658013
Max2381

Type Total Variants
None0
22
51
5|51

Chromossome Total Variants
12659
101128
111838
121453
13408
14732
15828
161428
171696
18383
191983
21726
20677
21391
22653
31450
41085
51091
61710
71443
8845
91075
M19
X636
Y12