Name: 16hpc01701_s1 genome
Variants: 26836
Novel Variants: 6983 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 26836 508 . 906 0 13239 0/1 1 1 12120 1/1 62 1/2
Total Gene-associated SNVs 26836 508 . 906 0 13239 0/1 1 1 12120 1/1 62 1/2

Type Total Variants
18
CODON_CHANGE_PLUS_CODON_DELETION248
CODON_CHANGE_PLUS_CODON_INSERTION25
CODON_DELETION64
CODON_INSERTION20
FRAME_SHIFT47
FRAME_SHIFT+SPLICE_SITE_REGION16
FRAME_SHIFT+STOP_GAINED2
MOTIF[MA0003.1:Ap2alpha]1
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]1
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0079.2:SP1]1
MOTIF[MA0095.1:Yy1]4
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]7
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0162.1:Egr1]9
NON_SYNONYMOUS_CODING8498
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION195
PROTEIN_PROTEIN_INTERACTION_LOCUS7
PROTEIN_STRUCTURAL_INTERACTION_LOCUS231
SPLICE_SITE_REGION11
SPLICE_SITE_REGION+CODON_DELETION4
SPLICE_SITE_REGION+SYNONYMOUS_CODING131
START_GAINED38
START_LOST9
START_LOST+SPLICE_SITE_REGION1
STOP_GAINED297
STOP_GAINED+SPLICE_SITE_REGION6
STOP_LOST18
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING6517
SYNONYMOUS_STOP6
None0

Type Total Variants
759
MISSENSE8722
NONSENSE303
SILENT6654
None0

Type Total Variants
HIGH635
LOW6716
MODERATE9054
MODIFIER33
None0

Type Total Variants
IndelConflict;LowGQX13
LowGQ3
LowGQ;LowGQX2287
LowGQ;LowGQX;LowMQ18
LowGQ;LowGQX;LowMQ;LowQD7
LowGQ;LowGQX;LowMQ;LowQD;SB77
LowGQ;LowGQX;LowMQ;SB32
LowGQ;LowGQX;LowQD1
LowGQ;LowGQX;LowQD;SB64
LowGQ;LowGQX;SB5213
LowGQ;SB2
LowGQX890
LowGQX;LowMQ9
LowGQX;LowMQ;LowQD12
LowGQX;LowMQ;LowQD;SB125
LowGQX;LowQD199
LowGQX;LowQD;SB1226
LowGQX;LowQD;SiteConflict1
LowGQX;SB456
LowGQX;SiteConflict1
LowMQ40
LowMQ;LowQD77
LowMQ;LowQD;SB167
LowMQ;SB34
LowQD412
LowQD;IndelConflict;LowGQX1
LowQD;LowGQX3
LowQD;SB484
LowQD;SiteConflict;LowGQX1
PASS14040
SB939
SiteConflict;LowGQX2

Quality Value
Min0.0
Average1049.70931808026
Max27540.2

Read Depth Value
Min0
Average79.08186764048294
Max2473

Type Total Variants
None0
2|22
23
51
5|51

Chromossome Total Variants
12643
101112
111761
121445
13400
14841
15759
161305
171654
18395
191865
21691
20605
21369
22667
31419
41132
51118
61609
71416
8846
91129
M18
X625
Y12