Name: 15ac02303_s1 genome
Variants: 26002
Novel Variants: 6919 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 26002 519 . 923 0 12514 0/1 2 1 11982 1/1 62 1/2
Total Gene-associated SNVs 26002 519 . 923 0 12514 0/1 2 1 11982 1/1 62 1/2

Type Total Variants
19
CODON_CHANGE_PLUS_CODON_DELETION234
CODON_CHANGE_PLUS_CODON_INSERTION33
CODON_DELETION66
CODON_INSERTION27
FRAME_SHIFT49
FRAME_SHIFT+SPLICE_SITE_REGION16
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST38
MOTIF[MA0003.1:Ap2alpha]3
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0058.1:Max]2
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]1
MOTIF[MA0079.2:SP1]2
MOTIF[MA0095.1:Yy1]4
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]9
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0162.1:Egr1]5
NON_SYNONYMOUS_CODING8080
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION210
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS193
SPLICE_SITE_REGION9
SPLICE_SITE_REGION+CODON_DELETION4
SPLICE_SITE_REGION+SYNONYMOUS_CODING138
START_GAINED48
START_LOST11
STOP_GAINED281
STOP_GAINED+SPLICE_SITE_REGION6
STOP_LOST15
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING6418
SYNONYMOUS_STOP7
None0

Type Total Variants
770
MISSENSE8320
NONSENSE287
SILENT6563
None0

Type Total Variants
HIGH615
LOW6638
MODERATE8654
MODIFIER33
None0

Type Total Variants
LowGQ4
LowGQ;LowGQX2116
LowGQ;LowGQX;LowMQ19
LowGQ;LowGQX;LowMQ;LowQD17
LowGQ;LowGQX;LowMQ;LowQD;SB82
LowGQ;LowGQX;LowMQ;SB27
LowGQ;LowGQX;LowQD2
LowGQ;LowGQX;LowQD;SB36
LowGQ;LowGQX;SB5073
LowGQX893
LowGQX;LowMQ1
LowGQX;LowMQ;LowQD14
LowGQX;LowMQ;LowQD;SB133
LowGQX;LowMQ;SB2
LowGQX;LowQD145
LowGQX;LowQD;SB1191
LowGQX;LowQD;SiteConflict2
LowGQX;SB494
LowGQX;SiteConflict1
LowMQ40
LowMQ;LowQD59
LowMQ;LowQD;SB175
LowMQ;SB48
LowQD405
LowQD;LowGQX4
LowQD;SB496
LowQD;SiteConflict;LowGQX2
PASS13607
SB911
SiteConflict;LowGQX3

Quality Value
Min0.0
Average1162.76910237681
Max58138.31

Read Depth Value
Min0
Average86.64098915468041
Max2936

Type Total Variants
None0
24
5|51

Chromossome Total Variants
12497
101117
111747
121492
13368
14704
15789
161278
171639
18412
191864
21695
20666
21322
22625
31437
41115
51035
61409
71394
8832
91101
M19
X427
Y18