Name: 15ac02301_s1 genome
Variants: 27451
Novel Variants: 7711 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 27451 484 . 1047 0 13009 0/1 3 1 12831 1/1 77 1/2
Total Gene-associated SNVs 27451 484 . 1047 0 13009 0/1 3 1 12831 1/1 77 1/2

Type Total Variants
29
CODON_CHANGE_PLUS_CODON_DELETION204
CODON_CHANGE_PLUS_CODON_INSERTION33
CODON_DELETION103
CODON_INSERTION17
FRAME_SHIFT65
FRAME_SHIFT+SPLICE_SITE_REGION13
FRAME_SHIFT+STOP_GAINED1
FRAME_SHIFT+STOP_LOST38
MOTIF[MA0003.1:Ap2alpha]2
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0058.1:Max]3
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]1
MOTIF[MA0079.2:SP1]3
MOTIF[MA0093.1:USF1]1
MOTIF[MA0095.1:Yy1]3
MOTIF[MA0138.2:Nrsf]2
MOTIF[MA0139.1:CTCF]5
MOTIF[MA0147.1:Cmyc]1
MOTIF[MA0162.1:Egr1]7
NON_SYNONYMOUS_CODING8710
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION220
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS197
SPLICE_SITE_REGION12
SPLICE_SITE_REGION+SYNONYMOUS_CODING135
START_GAINED50
START_LOST11
STOP_GAINED334
STOP_GAINED+SPLICE_SITE_REGION11
STOP_LOST22
SYNONYMOUS_CODING6696
SYNONYMOUS_STOP3
None0

Type Total Variants
794
MISSENSE8964
NONSENSE345
SILENT6834
None0

Type Total Variants
HIGH694
LOW6913
MODERATE9287
MODIFIER43
None0

Type Total Variants
IndelConflict;LowGQX16
LowGQ2
LowGQ;LowGQX2577
LowGQ;LowGQX;LowMQ20
LowGQ;LowGQX;LowMQ;LowQD6
LowGQ;LowGQX;LowMQ;LowQD;SB82
LowGQ;LowGQX;LowMQ;SB25
LowGQ;LowGQX;LowQD2
LowGQ;LowGQX;LowQD;SB54
LowGQ;LowGQX;SB5631
LowGQX931
LowGQX;IndelConflict1
LowGQX;LowMQ8
LowGQX;LowMQ;LowQD14
LowGQX;LowMQ;LowQD;SB92
LowGQX;LowQD202
LowGQX;LowQD;SB1243
LowGQX;LowQD;SiteConflict2
LowGQX;SB519
LowMQ36
LowMQ;LowQD44
LowMQ;LowQD;SB176
LowMQ;SB33
LowQD403
LowQD;LowGQX5
LowQD;SB436
LowQD;SiteConflict;LowGQX4
PASS13995
SB889
SiteConflict;LowGQX3

Quality Value
Min0.0
Average1076.52144002047
Max45648.01

Read Depth Value
Min0
Average78.79636443116826
Max2519

Type Total Variants
None0
2|22
25

Chromossome Total Variants
12576
101096
111881
121437
13443
14737
15810
161302
171604
18423
191918
21744
20701
21380
22604
31567
41069
51123
61826
71485
8858
91137
M29
X688
Y13