Name: 15ac02302_s1 genome
Variants: 25474
Novel Variants: 6154 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
30 | |
CODON_CHANGE_PLUS_CODON_DELETION | 224 |
CODON_CHANGE_PLUS_CODON_INSERTION | 36 |
CODON_DELETION | 79 |
CODON_INSERTION | 20 |
FRAME_SHIFT | 71 |
FRAME_SHIFT+SPLICE_SITE_REGION | 18 |
FRAME_SHIFT+STOP_GAINED | 1 |
FRAME_SHIFT+STOP_LOST | 38 |
MOTIF[MA0003.1:Ap2alpha] | 1 |
MOTIF[MA0024.1:E2F1] | 1 |
MOTIF[MA0058.1:Max] | 2 |
MOTIF[MA0062.1:Gabp] | 1 |
MOTIF[MA0062.2:Gabp] | 1 |
MOTIF[MA0079.2:SP1] | 2 |
MOTIF[MA0093.1:USF1] | 1 |
MOTIF[MA0095.1:Yy1] | 3 |
MOTIF[MA0138.2:Nrsf] | 1 |
MOTIF[MA0139.1:CTCF] | 9 |
MOTIF[MA0147.1:Cmyc] | 5 |
MOTIF[MA0162.1:Egr1] | 7 |
NON_SYNONYMOUS_CODING | 7719 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 207 |
NON_SYNONYMOUS_START | 1 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 3 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 189 |
SPLICE_SITE_REGION | 11 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 127 |
START_GAINED | 36 |
START_LOST | 8 |
START_LOST+SPLICE_SITE_REGION | 1 |
STOP_GAINED | 282 |
STOP_GAINED+SPLICE_SITE_REGION | 11 |
STOP_LOST | 14 |
STOP_LOST+SPLICE_SITE_REGION | 1 |
SYNONYMOUS_CODING | 6213 |
SYNONYMOUS_STOP | 3 |
None | 0 |
Type | Total Variants |
---|---|
IndelConflict;LowGQX | 28 |
LowGQ | 5 |
LowGQ;LowGQX | 2200 |
LowGQ;LowGQX;LowMQ | 19 |
LowGQ;LowGQX;LowMQ;LowQD | 16 |
LowGQ;LowGQX;LowMQ;LowQD;SB | 61 |
LowGQ;LowGQX;LowMQ;SB | 13 |
LowGQ;LowGQX;LowQD | 1 |
LowGQ;LowGQX;LowQD;SB | 55 |
LowGQ;LowGQX;SB | 4445 |
LowGQ;LowMQ;LowQD;SB | 1 |
LowGQX | 879 |
LowGQX;IndelConflict | 1 |
LowGQX;LowMQ | 3 |
LowGQX;LowMQ;LowQD | 15 |
LowGQX;LowMQ;LowQD;SB | 112 |
LowGQX;LowQD | 182 |
LowGQX;LowQD;IndelConflict | 1 |
LowGQX;LowQD;SB | 1093 |
LowGQX;LowQD;SiteConflict | 2 |
LowGQX;SB | 298 |
LowMQ | 41 |
LowMQ;LowQD | 53 |
LowMQ;LowQD;SB | 139 |
LowMQ;SB | 38 |
LowQD | 422 |
LowQD;IndelConflict;LowGQX | 1 |
LowQD;LowGQX | 10 |
LowQD;SB | 479 |
LowQD;SiteConflict;LowGQX | 5 |
PASS | 13998 |
SB | 856 |
SiteConflict;LowGQX | 2 |
Quality | Value |
---|---|
Min | 0.0 |
Average | 1199.38992148864 |
Max | 48990.01 |
Read Depth | Value |
---|---|
Min | 0 |
Average | 85.8728114940724 |
Max | 2581 |