Name: 15ac02302_s1 genome
Variants: 25474
Novel Variants: 6154 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 25474 491 . 954 0 12468 0/1 11468 1/1 93 1/2
Total Gene-associated SNVs 25474 491 . 954 0 12468 0/1 11468 1/1 93 1/2

Type Total Variants
30
CODON_CHANGE_PLUS_CODON_DELETION224
CODON_CHANGE_PLUS_CODON_INSERTION36
CODON_DELETION79
CODON_INSERTION20
FRAME_SHIFT71
FRAME_SHIFT+SPLICE_SITE_REGION18
FRAME_SHIFT+STOP_GAINED1
FRAME_SHIFT+STOP_LOST38
MOTIF[MA0003.1:Ap2alpha]1
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0058.1:Max]2
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]1
MOTIF[MA0079.2:SP1]2
MOTIF[MA0093.1:USF1]1
MOTIF[MA0095.1:Yy1]3
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]9
MOTIF[MA0147.1:Cmyc]5
MOTIF[MA0162.1:Egr1]7
NON_SYNONYMOUS_CODING7719
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION207
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS189
SPLICE_SITE_REGION11
SPLICE_SITE_REGION+SYNONYMOUS_CODING127
START_GAINED36
START_LOST8
START_LOST+SPLICE_SITE_REGION1
STOP_GAINED282
STOP_GAINED+SPLICE_SITE_REGION11
STOP_LOST14
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING6213
SYNONYMOUS_STOP3
None0

Type Total Variants
790
MISSENSE7951
NONSENSE293
SILENT6343
None0

Type Total Variants
HIGH637
LOW6410
MODERATE8285
MODIFIER45
None0

Type Total Variants
IndelConflict;LowGQX28
LowGQ5
LowGQ;LowGQX2200
LowGQ;LowGQX;LowMQ19
LowGQ;LowGQX;LowMQ;LowQD16
LowGQ;LowGQX;LowMQ;LowQD;SB61
LowGQ;LowGQX;LowMQ;SB13
LowGQ;LowGQX;LowQD1
LowGQ;LowGQX;LowQD;SB55
LowGQ;LowGQX;SB4445
LowGQ;LowMQ;LowQD;SB1
LowGQX879
LowGQX;IndelConflict1
LowGQX;LowMQ3
LowGQX;LowMQ;LowQD15
LowGQX;LowMQ;LowQD;SB112
LowGQX;LowQD182
LowGQX;LowQD;IndelConflict1
LowGQX;LowQD;SB1093
LowGQX;LowQD;SiteConflict2
LowGQX;SB298
LowMQ41
LowMQ;LowQD53
LowMQ;LowQD;SB139
LowMQ;SB38
LowQD422
LowQD;IndelConflict;LowGQX1
LowQD;LowGQX10
LowQD;SB479
LowQD;SiteConflict;LowGQX5
PASS13998
SB856
SiteConflict;LowGQX2

Quality Value
Min0.0
Average1199.38992148864
Max48990.01

Read Depth Value
Min0
Average85.8728114940724
Max2581

Type Total Variants
None0
2|22
23

Chromossome Total Variants
12334
101019
111629
121294
13371
14721
15706
161330
171574
18384
191637
21656
20620
21361
22546
31440
41001
51026
62000
71385
8766
91036
M30
X589
Y19