Name: 13ac00301-2_s1 genome
Variants: 25543
Novel Variants: 6415 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 25543 487 . 914 0 12694 0/1 1 1 11357 1/1 90 1/2
Total Gene-associated SNVs 25543 487 . 914 0 12694 0/1 1 1 11357 1/1 90 1/2

Type Total Variants
20
CODON_CHANGE_PLUS_CODON_DELETION254
CODON_CHANGE_PLUS_CODON_INSERTION32
CODON_DELETION62
CODON_INSERTION27
FRAME_SHIFT67
FRAME_SHIFT+SPLICE_SITE_REGION15
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST2
MOTIF[MA0058.1:Max]2
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]1
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.2:SP1]1
MOTIF[MA0095.1:Yy1]4
MOTIF[MA0139.1:CTCF]7
MOTIF[MA0147.1:Cmyc]1
MOTIF[MA0162.1:Egr1]5
NON_SYNONYMOUS_CODING7897
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION191
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS185
SPLICE_SITE_REGION11
SPLICE_SITE_REGION+SYNONYMOUS_CODING132
START_GAINED51
START_LOST7
START_LOST+SPLICE_SITE_REGION1
STOP_GAINED253
STOP_GAINED+SPLICE_SITE_REGION10
STOP_LOST19
SYNONYMOUS_CODING6243
SYNONYMOUS_STOP4
None0

Type Total Variants
756
MISSENSE8116
NONSENSE263
SILENT6379
None0

Type Total Variants
HIGH565
LOW6455
MODERATE8463
MODIFIER31
None0

Type Total Variants
IndelConflict;LowGQX5
LowGQ2
LowGQ;LowGQX2356
LowGQ;LowGQX;LowMQ9
LowGQ;LowGQX;LowMQ;LowQD11
LowGQ;LowGQX;LowMQ;LowQD;SB100
LowGQ;LowGQX;LowMQ;SB27
LowGQ;LowGQX;LowQD5
LowGQ;LowGQX;LowQD;SB51
LowGQ;LowGQX;SB4412
LowGQ;SB1
LowGQX867
LowGQX;IndelConflict5
LowGQX;LowMQ2
LowGQX;LowMQ;LowQD24
LowGQX;LowMQ;LowQD;SB127
LowGQX;LowQD177
LowGQX;LowQD;IndelConflict3
LowGQX;LowQD;SB1100
LowGQX;LowQD;SiteConflict3
LowGQX;SB313
LowMQ23
LowMQ;LowQD51
LowMQ;LowQD;SB146
LowMQ;SB31
LowQD428
LowQD;LowGQX7
LowQD;SB446
PASS13873
SB938

Quality Value
Min0.0
Average983.938034686664
Max59569.4

Read Depth Value
Min0
Average76.27510472536507
Max2382

Type Total Variants
None0
23

Chromossome Total Variants
12271
101081
111609
121364
13380
14665
15752
161098
171512
18390
191735
21762
20630
21347
22579
31418
41123
51036
61990
71283
8767
91074
M20
X645
Y12