Name: 13ac00301-2_s1 genome
Variants: 25543
Novel Variants: 6415 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
20 | |
CODON_CHANGE_PLUS_CODON_DELETION | 254 |
CODON_CHANGE_PLUS_CODON_INSERTION | 32 |
CODON_DELETION | 62 |
CODON_INSERTION | 27 |
FRAME_SHIFT | 67 |
FRAME_SHIFT+SPLICE_SITE_REGION | 15 |
FRAME_SHIFT+STOP_GAINED | 2 |
FRAME_SHIFT+STOP_LOST | 2 |
MOTIF[MA0058.1:Max] | 2 |
MOTIF[MA0059.1:Cmyc] | 1 |
MOTIF[MA0062.1:Gabp] | 1 |
MOTIF[MA0062.2:Gabp] | 1 |
MOTIF[MA0065.1:PPARG] | 1 |
MOTIF[MA0079.2:SP1] | 1 |
MOTIF[MA0095.1:Yy1] | 4 |
MOTIF[MA0139.1:CTCF] | 7 |
MOTIF[MA0147.1:Cmyc] | 1 |
MOTIF[MA0162.1:Egr1] | 5 |
NON_SYNONYMOUS_CODING | 7897 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 191 |
NON_SYNONYMOUS_START | 1 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 4 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 185 |
SPLICE_SITE_REGION | 11 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 132 |
START_GAINED | 51 |
START_LOST | 7 |
START_LOST+SPLICE_SITE_REGION | 1 |
STOP_GAINED | 253 |
STOP_GAINED+SPLICE_SITE_REGION | 10 |
STOP_LOST | 19 |
SYNONYMOUS_CODING | 6243 |
SYNONYMOUS_STOP | 4 |
None | 0 |
Type | Total Variants |
---|---|
None | 0 |
Type | Total Variants |
---|---|
IndelConflict;LowGQX | 5 |
LowGQ | 2 |
LowGQ;LowGQX | 2356 |
LowGQ;LowGQX;LowMQ | 9 |
LowGQ;LowGQX;LowMQ;LowQD | 11 |
LowGQ;LowGQX;LowMQ;LowQD;SB | 100 |
LowGQ;LowGQX;LowMQ;SB | 27 |
LowGQ;LowGQX;LowQD | 5 |
LowGQ;LowGQX;LowQD;SB | 51 |
LowGQ;LowGQX;SB | 4412 |
LowGQ;SB | 1 |
LowGQX | 867 |
LowGQX;IndelConflict | 5 |
LowGQX;LowMQ | 2 |
LowGQX;LowMQ;LowQD | 24 |
LowGQX;LowMQ;LowQD;SB | 127 |
LowGQX;LowQD | 177 |
LowGQX;LowQD;IndelConflict | 3 |
LowGQX;LowQD;SB | 1100 |
LowGQX;LowQD;SiteConflict | 3 |
LowGQX;SB | 313 |
LowMQ | 23 |
LowMQ;LowQD | 51 |
LowMQ;LowQD;SB | 146 |
LowMQ;SB | 31 |
LowQD | 428 |
LowQD;LowGQX | 7 |
LowQD;SB | 446 |
PASS | 13873 |
SB | 938 |
Quality | Value |
---|---|
Min | 0.0 |
Average | 983.938034686623 |
Max | 59569.4 |
Read Depth | Value |
---|---|
Min | 0 |
Average | 76.27510472536507 |
Max | 2382 |