Name: 12ac02301-1_s1 genome
Variants: 24516
Novel Variants: 5992 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 24516 418 . 1027 0 12146 0/1 2 1 10852 1/1 71 1/2
Total Gene-associated SNVs 24516 418 . 1027 0 12146 0/1 2 1 10852 1/1 71 1/2

Type Total Variants
22
CODON_CHANGE_PLUS_CODON_DELETION222
CODON_CHANGE_PLUS_CODON_INSERTION23
CODON_DELETION52
CODON_INSERTION15
FRAME_SHIFT89
FRAME_SHIFT+SPLICE_SITE_REGION19
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST36
MOTIF[MA0003.1:Ap2alpha]4
MOTIF[MA0058.1:Max]3
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0079.2:SP1]2
MOTIF[MA0095.1:Yy1]3
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]8
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0162.1:Egr1]7
NON_SYNONYMOUS_CODING7518
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION179
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS185
SPLICE_SITE_REGION8
SPLICE_SITE_REGION+SYNONYMOUS_CODING114
START_GAINED56
START_LOST9
STOP_GAINED242
STOP_GAINED+SPLICE_SITE_REGION7
STOP_LOST13
SYNONYMOUS_CODING6032
SYNONYMOUS_STOP5
None0

Type Total Variants
764
MISSENSE7720
NONSENSE249
SILENT6151
None0

Type Total Variants
HIGH607
LOW6232
MODERATE8009
MODIFIER36
None0

Type Total Variants
LowGQ3
LowGQ;LowGQX2117
LowGQ;LowGQX;LowMQ9
LowGQ;LowGQX;LowMQ;LowQD9
LowGQ;LowGQX;LowMQ;LowQD;SB94
LowGQ;LowGQX;LowMQ;SB24
LowGQ;LowGQX;LowQD5
LowGQ;LowGQX;LowQD;SB47
LowGQ;LowGQX;SB4105
LowGQ;LowMQ;LowQD1
LowGQ;SB2
LowGQX801
LowGQX;LowMQ1
LowGQX;LowMQ;LowQD16
LowGQX;LowMQ;LowQD;SB85
LowGQX;LowQD187
LowGQX;LowQD;SB1081
LowGQX;LowQD;SiteConflict2
LowGQX;SB277
LowGQX;SiteConflict2
LowMQ26
LowMQ;LowQD55
LowMQ;LowQD;SB115
LowMQ;SB35
LowQD433
LowQD;LowGQX2
LowQD;SB502
LowQD;SiteConflict;LowGQX1
PASS13634
SB841
SiteConflict;LowGQX4

Quality Value
Min0.0
Average1015.57121594066
Max46106.76

Read Depth Value
Min0
Average78.4501550008158
Max2245

Type Total Variants
None0
22
5|51

Chromossome Total Variants
12355
101018
111680
121311
13367
14597
15718
161130
171381
18373
191764
21611
20589
21327
22545
31266
41007
5985
61768
71322
8770
91022
M22
X568
Y20