Name: 9040 cleaned_snpindel
Variants: 23323
Novel Variants: 1105 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 23323 12179 0/1 10952 1/1 192 1/2
Total Gene-associated SNVs 23323 12179 0/1 10952 1/1 192 1/2

Type Total Variants
37
CODON_CHANGE_PLUS_CODON_DELETION20
CODON_CHANGE_PLUS_CODON_INSERTION30
CODON_DELETION10
CODON_INSERTION13
FRAME_SHIFT18
FRAME_SHIFT+SPLICE_SITE_REGION1
MOTIF[MA0003.1:Ap2alpha]4
MOTIF[MA0014.1:Pax5]6
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0058.1:Max]3
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]2
MOTIF[MA0062.2:Gabp]3
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]4
MOTIF[MA0080.2:PU1]2
MOTIF[MA0093.1:USF1]1
MOTIF[MA0095.1:Yy1]1
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]9
MOTIF[MA0147.1:Cmyc]1
MOTIF[MA0162.1:Egr1]6
NON_SYNONYMOUS_CODING404
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION12
PROTEIN_PROTEIN_INTERACTION_LOCUS1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS13
SPLICE_SITE_REGION2
SPLICE_SITE_REGION+SYNONYMOUS_CODING11
START_GAINED11
STOP_GAINED3
STOP_LOST1
SYNONYMOUS_CODING654
SYNONYMOUS_STOP1
TRANSCRIPT1
None0

Type Total Variants
207
MISSENSE417
NONSENSE3
SILENT666
None0

Type Total Variants
HIGH37
LOW705
MODERATE489
MODIFIER62
None0

Type Total Variants
LowQual153
LowQual;VariantFilter608
PASS19402
VariantFilter3160

Quality Value
Min10.15
Average2424.5054075382
Max29243.77

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
12102
101152
11898
121217
13411
14856
15561
16978
171288
18638
19914
22997
20545
21395
22530
3979
4653
51115
61359
71184
8766
91006
M37
X549
Y193