Name: tsvc_variants_ionxpress_001-5225
Variants: 33818
Novel Variants: 600 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 43 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 25 |
| CODON_DELETION | 17 |
| CODON_INSERTION | 16 |
| FRAME_SHIFT | 187 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 31 |
| FRAME_SHIFT+START_LOST | 1 |
| FRAME_SHIFT+STOP_GAINED | 1 |
| FRAME_SHIFT+STOP_LOST | 2 |
| MOTIF[MA0003.1:Ap2alpha] | 2 |
| MOTIF[MA0024.1:E2F1] | 1 |
| MOTIF[MA0035.2:Gata1] | 1 |
| MOTIF[MA0058.1:Max] | 4 |
| MOTIF[MA0062.1:Gabp] | 3 |
| MOTIF[MA0062.2:Gabp] | 5 |
| MOTIF[MA0079.1:SP1] | 1 |
| MOTIF[MA0079.2:SP1] | 3 |
| MOTIF[MA0095.1:Yy1] | 3 |
| MOTIF[MA0114.1:HNF4A] | 2 |
| MOTIF[MA0139.1:CTCF] | 11 |
| MOTIF[MA0147.1:Cmyc] | 2 |
| MOTIF[MA0162.1:Egr1] | 3 |
| NON_SYNONYMOUS_CODING | 7623 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 178 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 5 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 206 |
| SPLICE_SITE_REGION | 13 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 193 |
| START_GAINED | 124 |
| START_LOST | 9 |
| STOP_GAINED | 51 |
| STOP_LOST | 15 |
| STOP_LOST+SPLICE_SITE_REGION | 3 |
| SYNONYMOUS_CODING | 8991 |
| SYNONYMOUS_STOP | 9 |
| TRANSCRIPT | 1 |
| None | 0 |
| Type | Total Variants |
|---|---|
| PASS | 33818 |
| Quality | Value |
|---|---|
| Min | 10.0 |
| Average | 274.290598293811 |
| Max | 3758.58 |
| Read Depth | Value |
|---|---|
| Min | 7 |
| Average | 60.421698503755394 |
| Max | 607 |
| Type | Total Variants |
|---|---|
| None | 0 |