Name: gt_so_4086_igt_1r
Variants: 38659
Novel Variants: 2022 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 38659 25485 0/1 13174 1/1
Total Gene-associated SNVs 38659 25485 0/1 13174 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION31
CODON_CHANGE_PLUS_CODON_INSERTION26
CODON_DELETION45
CODON_DELETION+SPLICE_SITE_REGION1
CODON_INSERTION38
CODON_INSERTION+SPLICE_SITE_REGION2
FRAME_SHIFT92
FRAME_SHIFT+SPLICE_SITE_REGION23
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_LOST2
MOTIF[MA0003.1:Ap2alpha]1
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]1
MOTIF[MA0062.2:Gabp]3
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]2
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0083.1:Srf]1
MOTIF[MA0095.1:Yy1]2
MOTIF[MA0139.1:CTCF]9
NON_SYNONYMOUS_CODING9431
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION207
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS227
SPLICE_SITE_REGION10
SPLICE_SITE_REGION+SYNONYMOUS_CODING214
START_GAINED51
START_LOST10
STOP_GAINED103
STOP_LOST22
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING9908
SYNONYMOUS_STOP12
None0

Type Total Variants
579
MISSENSE9672
NONSENSE103
SILENT10134
None0

Type Total Variants
HIGH486
LOW10206
MODERATE9781
MODIFIER15
None0

Type Total Variants
.38659

Quality Value
Min3.0136
Average206.233289134631
Max226.2

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
13953
101640
112801
121915
13706
141451
151278
161462
172116
18656
192756
22698
201071
21525
22944
32001
41475
51610
61673
72500
81289
91623
X447
Y69