Name: 030_tsvc_variants
Variants: 37487
Novel Variants: 424 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 37487 22974 0/1 7 0/2 14421 1/1 63 1/2 4 1/3 15 2/2 3 2/3
Total Gene-associated SNVs 37487 22974 0/1 7 0/2 14421 1/1 63 1/2 4 1/3 15 2/2 3 2/3

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION65
CODON_CHANGE_PLUS_CODON_INSERTION47
CODON_DELETION28
CODON_INSERTION34
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT141
FRAME_SHIFT+SPLICE_SITE_REGION22
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST3
MOTIF[MA0003.1:Ap2alpha]5
MOTIF[MA0014.1:Pax5]1
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]4
MOTIF[MA0062.1:Gabp]2
MOTIF[MA0062.2:Gabp]7
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]3
MOTIF[MA0095.1:Yy1]1
MOTIF[MA0114.1:HNF4A]2
MOTIF[MA0139.1:CTCF]7
MOTIF[MA0147.1:Cmyc]1
MOTIF[MA0162.1:Egr1]4
NON_SYNONYMOUS_CODING8355
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION195
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS239
SPLICE_SITE_REGION14
SPLICE_SITE_REGION+SYNONYMOUS_CODING214
START_GAINED137
START_LOST10
START_LOST+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_GAINED69
STOP_LOST16
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING9699
SYNONYMOUS_STOP10
TRANSCRIPT1
None0

Type Total Variants
788
MISSENSE8579
NONSENSE69
SILENT9923
None0

Type Total Variants
HIGH516
LOW10096
MODERATE8725
MODIFIER22
None0

Type Total Variants
PASS37487

Quality Value
Min10.0
Average474.769998308748
Max3853.67

Read Depth Value
Min5
Average98.72745218342358
Max1046

Type Total Variants
None0

Chromossome Total Variants
13990
101528
112640
122001
13657
141186
151273
161606
172299
18647
192599
22513
20939
21504
22854
31984
41451
51681
62125
71657
81321
91519
X509
Y4