Name: hgcat_input_example-3
Variants: 3403
Novel Variants: 66 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 3403 2069 0/1 1334 1/1
Total Gene-associated SNVs 3403 2069 0/1 1334 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION8
CODON_CHANGE_PLUS_CODON_INSERTION4
CODON_DELETION2
CODON_INSERTION5
FRAME_SHIFT19
FRAME_SHIFT+SPLICE_SITE_REGION2
MOTIF[MA0014.1:Pax5]1
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0062.2:Gabp]1
MOTIF[MA0080.1:PU1]1
MOTIF[MA0139.1:CTCF]5
MOTIF[MA0147.1:Cmyc]2
MOTIF[MA0162.1:Egr1]1
NON_SYNONYMOUS_CODING469
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION14
PROTEIN_PROTEIN_INTERACTION_LOCUS1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS13
SPLICE_SITE_REGION5
SPLICE_SITE_REGION+SYNONYMOUS_CODING14
START_GAINED22
STOP_GAINED6
SYNONYMOUS_CODING627
SYNONYMOUS_STOP1
None0

Type Total Variants
93
MISSENSE483
NONSENSE6
SILENT642
None0

Type Total Variants
HIGH41
LOW673
MODERATE502
MODIFIER8
None0

Type Total Variants
PASS3403

Quality Value
Min40.13
Average5882.34014692917
Max68127.1

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
1152
10163
11172
12140
13165
14171
15123
1687
17144
18111
19150
2151
20160
21149
22176
3169
4142
5126
6157
7130
8162
9164
X139