Name: mm180111m
Variants: 162870
Novel Variants: 3946 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 162870 103244 0/1 58898 1/1 728 1/2
Total Gene-associated SNVs 162870 103244 0/1 58898 1/1 728 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION119
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION1
CODON_CHANGE_PLUS_CODON_INSERTION88
CODON_DELETION52
CODON_DELETION+SPLICE_SITE_REGION2
CODON_INSERTION70
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT175
FRAME_SHIFT+SPLICE_SITE_REGION43
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST2
MOTIF_DELETED3
MOTIF[MA0003.1:Ap2alpha]30
MOTIF[MA0014.1:Pax5]6
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]7
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0058.1:Max]20
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]12
MOTIF[MA0062.2:Gabp]36
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]6
MOTIF[MA0079.2:SP1]25
MOTIF[MA0080.2:PU1]3
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]8
MOTIF[MA0095.1:Yy1]9
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]3
MOTIF[MA0114.1:HNF4A]12
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]6
MOTIF[MA0139.1:CTCF]118
MOTIF[MA0147.1:Cmyc]12
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]4
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]50
NON_SYNONYMOUS_CODING13329
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION249
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS270
SPLICE_SITE_REGION45
SPLICE_SITE_REGION+SYNONYMOUS_CODING274
START_GAINED386
START_LOST20
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED151
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST25
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING12945
SYNONYMOUS_STOP14
TRANSCRIPT2
None0

Type Total Variants
1653
MISSENSE13626
NONSENSE154
SILENT13233
None0

Type Total Variants
HIGH702
LOW13833
MODERATE13911
MODIFIER220
None0

Type Total Variants
.157355
LowQual5515

Quality Value
Min10.17
Average1365.96936250009
Max65449.29

Read Depth Value
Min1
Average97.20780376987781
Max7304

Type Total Variants
None0

Chromossome Total Variants
115676
106942
119020
128515
133061
145635
155877
167338
178980
182986
1911029
211000
204184
212586
225002
38903
46520
56523
69206
78629
85328
97043
X2655
Y232