Name: mm180110lp
Variants: 159654
Novel Variants: 3930 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 159654 99416 0/1 59537 1/1 701 1/2
Total Gene-associated SNVs 159654 99416 0/1 59537 1/1 701 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION130
CODON_CHANGE_PLUS_CODON_INSERTION78
CODON_DELETION54
CODON_DELETION+SPLICE_SITE_REGION1
CODON_INSERTION65
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT180
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_LOST3
GENE_FUSION1
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]29
MOTIF[MA0014.1:Pax5]7
MOTIF[MA0016.1:RXRA]4
MOTIF[MA0024.1:E2F1]5
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0058.1:Max]19
MOTIF[MA0059.1:Cmyc]5
MOTIF[MA0062.1:Gabp]13
MOTIF[MA0062.2:Gabp]33
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]9
MOTIF[MA0079.2:SP1]22
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]5
MOTIF[MA0083.1:Srf]2
MOTIF[MA0093.1:USF1]10
MOTIF[MA0095.1:Yy1]10
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]10
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]8
MOTIF[MA0139.1:CTCF]107
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]13
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]4
MOTIF[MA0159.1:RXR]4
MOTIF[MA0162.1:Egr1]55
NON_SYNONYMOUS_CODING13430
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION262
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS270
SPLICE_SITE_REGION44
SPLICE_SITE_REGION+SYNONYMOUS_CODING274
START_GAINED365
START_LOST14
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED144
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST25
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING12842
SYNONYMOUS_STOP11
TRANSCRIPT3
None0

Type Total Variants
1631
MISSENSE13736
NONSENSE146
SILENT13127
None0

Type Total Variants
HIGH693
LOW13704
MODERATE14021
MODIFIER222
None0

Type Total Variants
.153642
LowQual6012

Quality Value
Min10.17
Average1350.09305523411
Max65449.29

Read Depth Value
Min1
Average95.74579402958899
Max6803

Type Total Variants
None0

Chromossome Total Variants
115512
106803
119101
128304
133173
145276
155864
167465
178796
182798
1910900
210895
204049
212519
224873
38963
46455
56215
69221
78478
85166
96736
X1821
Y271