Name: mm180106mm
Variants: 162302
Novel Variants: 4074 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 162302 103795 0/1 57765 1/1 742 1/2
Total Gene-associated SNVs 162302 103795 0/1 57765 1/1 742 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION124
CODON_CHANGE_PLUS_CODON_INSERTION81
CODON_CHANGE_PLUS_CODON_INSERTION+SPLICE_SITE_REGION1
CODON_DELETION51
CODON_INSERTION71
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT184
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_LOST5
GENE_FUSION1
GENE_FUSION_REVERESE2
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]31
MOTIF[MA0014.1:Pax5]4
MOTIF[MA0016.1:RXRA]7
MOTIF[MA0024.1:E2F1]6
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]18
MOTIF[MA0059.1:Cmyc]5
MOTIF[MA0062.1:Gabp]11
MOTIF[MA0062.2:Gabp]37
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]7
MOTIF[MA0079.2:SP1]26
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]5
MOTIF[MA0093.1:USF1]9
MOTIF[MA0095.1:Yy1]13
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]13
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]117
MOTIF[MA0140.1:Tal1]3
MOTIF[MA0147.1:Cmyc]13
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]6
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]54
NON_SYNONYMOUS_CODING13525
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION269
NON_SYNONYMOUS_START2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS260
SPLICE_SITE_REGION50
SPLICE_SITE_REGION+SYNONYMOUS_CODING268
START_GAINED387
START_LOST11
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED134
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST24
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING12863
SYNONYMOUS_STOP13
TRANSCRIPT1
None0

Type Total Variants
1673
MISSENSE13835
NONSENSE137
SILENT13144
None0

Type Total Variants
HIGH679
LOW13767
MODERATE14123
MODIFIER220
None0

Type Total Variants
.156349
LowQual5953

Quality Value
Min10.17
Average1426.38989507472
Max65449.29

Read Depth Value
Min1
Average100.91266897512045
Max10000

Type Total Variants
None0

Chromossome Total Variants
115486
107085
119320
128624
132972
145518
155678
167788
178979
182720
1910600
211481
204176
212397
224418
38910
46652
56645
68570
78777
85518
97165
X2541
Y282