Name: mm180101la
Variants: 166172
Novel Variants: 4108 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 166172 107471 0/1 57878 1/1 823 1/2
Total Gene-associated SNVs 166172 107471 0/1 57878 1/1 823 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION61
CODON_CHANGE_PLUS_CODON_INSERTION50
CODON_DELETION21
CODON_INSERTION33
FRAME_SHIFT78
FRAME_SHIFT+SPLICE_SITE_REGION13
FRAME_SHIFT+START_LOST1
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST2
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]12
MOTIF[MA0014.1:Pax5]6
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]7
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]12
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]5
MOTIF[MA0062.2:Gabp]16
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]16
MOTIF[MA0080.2:PU1]5
MOTIF[MA0083.1:Srf]1
MOTIF[MA0114.1:HNF4A]3
MOTIF[MA0138.1:Nrsf]2
MOTIF[MA0138.2:Nrsf]2
MOTIF[MA0139.1:CTCF]53
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]10
MOTIF[MA0154.1:EBF]1
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]28
NON_SYNONYMOUS_CODING6933
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION135
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS151
SPLICE_SITE_REGION24
SPLICE_SITE_REGION+SYNONYMOUS_CODING143
START_GAINED195
START_LOST9
STOP_GAINED82
STOP_GAINED+SPLICE_SITE_REGION4
STOP_LOST16
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING6532
SYNONYMOUS_STOP6
None0

Type Total Variants
829
MISSENSE7096
NONSENSE86
SILENT6681
None0

Type Total Variants
HIGH364
LOW6986
MODERATE7233
MODIFIER109
None0

Type Total Variants
.160876
LowQual5296

Quality Value
Min10.17
Average1431.88495252175
Max65449.29

Read Depth Value
Min1
Average98.05446164215391
Max7960

Type Total Variants
None0

Chromossome Total Variants
116270
106671
119379
128691
133158
146101
155784
167087
178896
182929
1911773
211629
204193
212814
224396
38908
46325
56896
69694
78955
85745
96911
X2646
Y321