Name: 62393865_s40 mvar 62393865_S40.FREEBAYES
Variants: 84977
Novel Variants: 11345 (Not in latest DbSNP Build)

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION36
CODON_CHANGE_PLUS_CODON_INSERTION45
CODON_DELETION85
CODON_INSERTION70
FRAME_SHIFT174
FRAME_SHIFT+NON_SYNONYMOUS_CODING7
FRAME_SHIFT+SPLICE_SITE_REGION45
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST2
GENE_FUSION1
MOTIF[MA0003.1:Ap2alpha]11
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]7
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]13
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]17
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]3
MOTIF[MA0093.1:USF1]3
MOTIF[MA0095.1:Yy1]4
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0138.2:Nrsf]3
MOTIF[MA0139.1:CTCF]60
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]2
MOTIF[MA0154.1:EBF]1
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]11
NON_SYNONYMOUS_CODING11058
NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION1
NON_SYNONYMOUS_CODING+CODON_DELETION1
NON_SYNONYMOUS_CODING+CODON_INSERTION1
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION238
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS6
PROTEIN_STRUCTURAL_INTERACTION_LOCUS263
SPLICE_SITE_REGION29
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+SYNONYMOUS_CODING244
START_GAINED186
START_LOST16
STOP_GAINED98
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST23
STOP_LOST+CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING11319
SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION1
SYNONYMOUS_CODING+CODON_INSERTION1
SYNONYMOUS_STOP10
TRANSCRIPT3
None0

Type Total Variants
1583
MISSENSE10938
NONSENSE92
SILENT11519
None0

Type Total Variants
HIGH646
LOW11856
MODERATE11539
MODIFIER91
None0

Type Total Variants
PASS84977

Quality Value
Min10.03
Average1319.35308742315
Max46663.2

Read Depth Value
Min2
Average63.29000788448639
Max2172

Type Total Variants
None0
2|21
22

Chromossome Total Variants
18287
103727
114975
124646
131550
142981
152802
164143
174762
181359
195705
26019
202004
211337
222309
34539
43315
53612
64820
74234
83016
93631
X1131
Y73