Name: fpd-alg-mad-1230-3
Variants: 73247
Novel Variants: 1471 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 73247 47234 0/1 274 0/2 1 0/3 25621 1/1 47 1/2 69 2/2 1 3/3
Total Gene-associated SNVs 73247 47234 0/1 274 0/2 1 0/3 25621 1/1 47 1/2 69 2/2 1 3/3

Type Total Variants
MOTIF[MA0003.1:Ap2alpha]6
MOTIF[MA0014.1:Pax5]5
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]6
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]7
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]8
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]1
MOTIF[MA0095.1:Yy1]7
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0114.1:HNF4A]2
MOTIF[MA0138.2:Nrsf]2
MOTIF[MA0139.1:CTCF]45
MOTIF[MA0147.1:Cmyc]5
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0162.1:Egr1]11
NON_SYNONYMOUS_CODING12541
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION254
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS285
SPLICE_SITE_REGION31
SPLICE_SITE_REGION+SYNONYMOUS_CODING271
START_GAINED183
START_LOST14
STOP_GAINED151
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST30
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING12481
SYNONYMOUS_STOP14
None0

Type Total Variants
624
MISSENSE12843
NONSENSE153
SILENT12766
None0

Type Total Variants
HIGH489
LOW13029
MODERATE12795
MODIFIER73
None0

Type Total Variants
AltDepth1984
AltDepth;SnpCluster388
AltDepth;SnpCluster;VQSRTrancheSNP99.90to100.00112
AltDepth;VQSRTrancheSNP99.90to100.00135
PASS63665
SnpCluster2985
SnpCluster;VQSRTrancheSNP99.90to100.001090
VQSRTrancheSNP99.90to100.002888

Quality Value
Min30.0
Average10488.1865878466
Max763166.0

Read Depth Value
Min1
Average98.28700151542043
Max4129

Type Total Variants
None0

Chromossome Total Variants
18288
102550
114403
123374
131259
142313
152356
162681
173928
181060
194813
25669
201977
211133
222094
34241
43097
53027
64634
73861
82318
93110
X957
Y104