Name: fpd-aix-mes-312-12
Variants: 69144
Novel Variants: 1154 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 69144 43609 0/1 164 0/2 3 0/3 25280 1/1 38 1/2 48 2/2 1 2/3 1 3/3
Total Gene-associated SNVs 69144 43609 0/1 164 0/2 3 0/3 25280 1/1 38 1/2 48 2/2 1 2/3 1 3/3

Type Total Variants
MOTIF[MA0003.1:Ap2alpha]7
MOTIF[MA0014.1:Pax5]6
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]5
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]6
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]10
MOTIF[MA0080.1:PU1]1
MOTIF[MA0095.1:Yy1]6
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0114.1:HNF4A]2
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]36
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0154.1:EBF]2
MOTIF[MA0162.1:Egr1]10
NON_SYNONYMOUS_CODING11667
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION246
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS255
SPLICE_SITE_REGION28
SPLICE_SITE_REGION+SYNONYMOUS_CODING274
START_GAINED176
START_LOST13
STOP_GAINED139
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST28
STOP_LOST+SPLICE_SITE_REGION5
SYNONYMOUS_CODING11755
SYNONYMOUS_STOP12
None0

Type Total Variants
573
MISSENSE11960
NONSENSE141
SILENT12041
None0

Type Total Variants
HIGH447
LOW12294
MODERATE11913
MODIFIER61
None0

Type Total Variants
AltDepth1802
AltDepth;SnpCluster368
AltDepth;SnpCluster;VQSRTrancheSNP99.90to100.0087
AltDepth;VQSRTrancheSNP99.90to100.00137
PASS60474
SnpCluster2612
SnpCluster;VQSRTrancheSNP99.90to100.00947
VQSRTrancheSNP99.90to100.002717

Quality Value
Min30.0
Average10576.6537371283
Max631467.0

Read Depth Value
Min0
Average97.86016140229087
Max4284

Type Total Variants
None0

Chromossome Total Variants
17741
102504
114315
123121
131192
142067
152244
162877
173813
181044
194216
25208
201731
21867
221951
34210
42808
52790
64331
73843
81946
93149
X1021
Y155