Name: trio_parsed_vcf15_03359procol_vcf_report overall_15_03359procol_R1_converted_Unique_Output.pjt
Variants: 29437
Novel Variants: 2570 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 29437 17213 0/1 12224 1/1
Total Gene-associated SNVs 29437 17213 0/1 12224 1/1

Type Total Variants
5
CODON_CHANGE_PLUS_CODON_INSERTION3
CODON_DELETION5
CODON_INSERTION5
FRAME_SHIFT9
FRAME_SHIFT+SPLICE_SITE_REGION1
MOTIF[MA0003.1:Ap2alpha]4
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]3
MOTIF[MA0062.2:Gabp]2
MOTIF[MA0079.1:SP1]1
MOTIF[MA0093.1:USF1]1
MOTIF[MA0095.1:Yy1]2
MOTIF[MA0139.1:CTCF]8
MOTIF[MA0162.1:Egr1]2
NON_SYNONYMOUS_CODING9538
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION205
NON_SYNONYMOUS_START4
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS210
SPLICE_SITE_REGION11
SPLICE_SITE_REGION+SYNONYMOUS_CODING193
SPLICE_SITE_REGION+SYNONYMOUS_STOP1
START_GAINED48
START_LOST4
STOP_GAINED92
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST24
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING9150
SYNONYMOUS_STOP5
None0

Type Total Variants
326
MISSENSE9778
NONSENSE93
SILENT9349
None0

Type Total Variants
HIGH349
LOW9423
MODERATE9756
MODIFIER18
None0

Type Total Variants
PASS29437

Quality Value
Min0.0
Average0.0
Max0.0

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
12927
101119
112004
121284
13530
14838
15912
162298
171661
18443
192262
21883
20676
21369
22663
31498
41066
51192
61252
72172
8938
91088
M5
X355
Y2