Name: snps raw SHA-06-33146
Variants: 635669
Novel Variants: 351026 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 635669 221413 0/1 31 0/2 414136 1/1 49 1/2 40 2/2
Total Gene-associated SNVs 635669 221413 0/1 31 0/2 414136 1/1 49 1/2 40 2/2

Type Total Variants
39
MOTIF[MA0003.1:Ap2alpha]28
MOTIF[MA0014.1:Pax5]5
MOTIF[MA0016.1:RXRA]4
MOTIF[MA0024.1:E2F1]16
MOTIF[MA0035.1:Gata1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]5
MOTIF[MA0058.1:Max]25
MOTIF[MA0059.1:Cmyc]10
MOTIF[MA0062.1:Gabp]11
MOTIF[MA0062.2:Gabp]48
MOTIF[MA0065.1:PPARG]4
MOTIF[MA0065.2:PPARG]3
MOTIF[MA0079.1:SP1]30
MOTIF[MA0079.2:SP1]111
MOTIF[MA0080.1:PU1]6
MOTIF[MA0080.2:PU1]7
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]27
MOTIF[MA0095.1:Yy1]21
MOTIF[MA0099.1:Cfos]19
MOTIF[MA0099.2:AP1]4
MOTIF[MA0105.1:NFKB]3
MOTIF[MA0114.1:HNF4A]20
MOTIF[MA0115.1:RNR1H2]2
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]21
MOTIF[MA0139.1:CTCF]208
MOTIF[MA0140.1:Tal1]3
MOTIF[MA0147.1:Cmyc]20
MOTIF[MA0148.1:FOXA1]4
MOTIF[MA0154.1:EBF]10
MOTIF[MA0159.1:RXR]5
MOTIF[MA0162.1:Egr1]87
NON_SYNONYMOUS_CODING22140
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION555
NON_SYNONYMOUS_START5
PROTEIN_PROTEIN_INTERACTION_LOCUS14
PROTEIN_STRUCTURAL_INTERACTION_LOCUS580
SPLICE_SITE_REGION55
SPLICE_SITE_REGION+SYNONYMOUS_CODING400
START_GAINED464
START_LOST37
START_LOST+SPLICE_SITE_REGION1
STOP_GAINED1159
STOP_GAINED+SPLICE_SITE_REGION36
STOP_LOST35
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING17577
SYNONYMOUS_STOP27
None0

Type Total Variants
1927
MISSENSE22776
NONSENSE1195
SILENT18005
None0

Type Total Variants
HIGH1866
LOW18805
MODERATE22695
MODIFIER537
None0

Type Total Variants
.236581
LowQual399088

Quality Value
Min10.0
Average344.650221970948
Max23695.3

Read Depth Value
Min1
Average8.802118712726278
Max200

Type Total Variants
None0

Chromossome Total Variants
156891
1030508
1131098
1232576
1316385
1420774
1520361
1626547
1731812
1813996
1932744
247291
2016559
218179
2214137
336938
430800
531109
631278
735460
826903
926366
M39
X14885
Y2033