Name: snps raw MG15-002
Variants: 611378
Novel Variants: 55128 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 611378 151779 0/1 37 0/2 459427 1/1 81 1/2 54 2/2
Total Gene-associated SNVs 611378 151779 0/1 37 0/2 459427 1/1 81 1/2 54 2/2

Type Total Variants
43
MOTIF[MA0003.1:Ap2alpha]59
MOTIF[MA0005.1:MEF2C]1
MOTIF[MA0014.1:Pax5]5
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]12
MOTIF[MA0035.1:Gata1]1
MOTIF[MA0035.2:Gata1]3
MOTIF[MA0036.1:Gata2]8
MOTIF[MA0047.1:FOXA2]5
MOTIF[MA0047.2:FOXA2]9
MOTIF[MA0058.1:Max]41
MOTIF[MA0059.1:Cmyc]10
MOTIF[MA0062.1:Gabp]22
MOTIF[MA0062.2:Gabp]60
MOTIF[MA0065.1:PPARG]5
MOTIF[MA0065.2:PPARG]7
MOTIF[MA0074.1:RXRA]1
MOTIF[MA0079.1:SP1]42
MOTIF[MA0079.2:SP1]122
MOTIF[MA0080.1:PU1]11
MOTIF[MA0080.2:PU1]11
MOTIF[MA0083.1:Srf]2
MOTIF[MA0093.1:USF1]37
MOTIF[MA0095.1:Yy1]26
MOTIF[MA0099.1:Cfos]8
MOTIF[MA0099.2:AP1]7
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0114.1:HNF4A]39
MOTIF[MA0138.1:Nrsf]2
MOTIF[MA0138.2:Nrsf]30
MOTIF[MA0139.1:CTCF]370
MOTIF[MA0140.1:Tal1]8
MOTIF[MA0147.1:Cmyc]36
MOTIF[MA0148.1:FOXA1]4
MOTIF[MA0154.1:EBF]20
MOTIF[MA0159.1:RXR]4
MOTIF[MA0162.1:Egr1]100
MOTIF[MA0239.1:Pax5]1
NON_SYNONYMOUS_CODING10610
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION231
NON_SYNONYMOUS_START+SPLICE_SITE_REGION1
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS238
SPLICE_SITE_REGION50
SPLICE_SITE_REGION+SYNONYMOUS_CODING236
START_GAINED443
START_LOST12
STOP_GAINED110
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST25
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11429
SYNONYMOUS_STOP13
None0

Type Total Variants
1909
MISSENSE10882
NONSENSE112
SILENT11678
None0

Type Total Variants
HIGH393
LOW12476
MODERATE10841
MODIFIER871
None0

Type Total Variants
.347868
LowQual263510

Quality Value
Min10.0
Average393.813051696713
Max23695.3

Read Depth Value
Min1
Average9.189224996646919
Max200

Type Total Variants
None0

Chromossome Total Variants
151005
1031931
1131827
1229425
1318303
1419226
1519812
1623822
1725068
1815785
1924686
246774
2015699
219406
2213015
335111
434174
530320
631216
733603
829054
925707
M43
X13816
Y2550