Name: snps raw MG15-001
Variants: 651711
Novel Variants: 63255 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 651711 166687 0/1 41 0/2 484854 1/1 81 1/2 48 2/2
Total Gene-associated SNVs 651711 166687 0/1 41 0/2 484854 1/1 81 1/2 48 2/2

Type Total Variants
43
MOTIF[MA0003.1:Ap2alpha]57
MOTIF[MA0014.1:Pax5]5
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]12
MOTIF[MA0035.1:Gata1]3
MOTIF[MA0035.2:Gata1]2
MOTIF[MA0036.1:Gata2]4
MOTIF[MA0047.1:FOXA2]5
MOTIF[MA0047.2:FOXA2]9
MOTIF[MA0058.1:Max]39
MOTIF[MA0059.1:Cmyc]17
MOTIF[MA0062.1:Gabp]22
MOTIF[MA0062.2:Gabp]46
MOTIF[MA0065.1:PPARG]7
MOTIF[MA0065.2:PPARG]4
MOTIF[MA0074.1:RXRA]2
MOTIF[MA0079.1:SP1]34
MOTIF[MA0079.2:SP1]113
MOTIF[MA0080.1:PU1]8
MOTIF[MA0080.2:PU1]6
MOTIF[MA0083.1:Srf]4
MOTIF[MA0093.1:USF1]47
MOTIF[MA0095.1:Yy1]23
MOTIF[MA0099.1:Cfos]12
MOTIF[MA0099.2:AP1]11
MOTIF[MA0105.1:NFKB]2
MOTIF[MA0114.1:HNF4A]39
MOTIF[MA0138.1:Nrsf]4
MOTIF[MA0138.2:Nrsf]37
MOTIF[MA0139.1:CTCF]367
MOTIF[MA0140.1:Tal1]9
MOTIF[MA0147.1:Cmyc]30
MOTIF[MA0148.1:FOXA1]3
MOTIF[MA0154.1:EBF]18
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]99
NON_SYNONYMOUS_CODING10595
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION218
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS230
SPLICE_SITE_REGION55
SPLICE_SITE_REGION+SYNONYMOUS_CODING234
START_GAINED462
START_LOST12
STOP_GAINED101
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST20
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11510
SYNONYMOUS_STOP13
None0

Type Total Variants
None0

Type Total Variants
HIGH371
LOW12577
MODERATE10813
MODIFIER844
None0

Type Total Variants
.363878
LowQual287833

Quality Value
Min10.0
Average378.338645550308
Max23695.3

Read Depth Value
Min1
Average10.27564518628656
Max200

Type Total Variants
None0

Chromossome Total Variants
154370
1034621
1134122
1231235
1319736
1421433
1521003
1625594
1727510
1816457
1926165
249600
2015950
2110383
2213808
337164
436094
532336
632609
735676
830628
927732
M43
X14815
Y2627