Name: snps raw MG15-001
Variants: 651711
Novel Variants: 63255 (Not in latest DbSNP Build)
Type | Total Variants | |||||
---|---|---|---|---|---|---|
Total SNVs | 651711 | 166687 0/1 | 41 0/2 | 484854 1/1 | 81 1/2 | 48 2/2 |
Total Gene-associated SNVs | 651711 | 166687 0/1 | 41 0/2 | 484854 1/1 | 81 1/2 | 48 2/2 |
Type | Total Variants |
---|---|
43 | |
MOTIF[MA0003.1:Ap2alpha] | 57 |
MOTIF[MA0014.1:Pax5] | 5 |
MOTIF[MA0016.1:RXRA] | 1 |
MOTIF[MA0024.1:E2F1] | 12 |
MOTIF[MA0035.1:Gata1] | 3 |
MOTIF[MA0035.2:Gata1] | 2 |
MOTIF[MA0036.1:Gata2] | 4 |
MOTIF[MA0047.1:FOXA2] | 5 |
MOTIF[MA0047.2:FOXA2] | 9 |
MOTIF[MA0058.1:Max] | 39 |
MOTIF[MA0059.1:Cmyc] | 17 |
MOTIF[MA0062.1:Gabp] | 22 |
MOTIF[MA0062.2:Gabp] | 46 |
MOTIF[MA0065.1:PPARG] | 7 |
MOTIF[MA0065.2:PPARG] | 4 |
MOTIF[MA0074.1:RXRA] | 2 |
MOTIF[MA0079.1:SP1] | 34 |
MOTIF[MA0079.2:SP1] | 113 |
MOTIF[MA0080.1:PU1] | 8 |
MOTIF[MA0080.2:PU1] | 6 |
MOTIF[MA0083.1:Srf] | 4 |
MOTIF[MA0093.1:USF1] | 47 |
MOTIF[MA0095.1:Yy1] | 23 |
MOTIF[MA0099.1:Cfos] | 12 |
MOTIF[MA0099.2:AP1] | 11 |
MOTIF[MA0105.1:NFKB] | 2 |
MOTIF[MA0114.1:HNF4A] | 39 |
MOTIF[MA0138.1:Nrsf] | 4 |
MOTIF[MA0138.2:Nrsf] | 37 |
MOTIF[MA0139.1:CTCF] | 367 |
MOTIF[MA0140.1:Tal1] | 9 |
MOTIF[MA0147.1:Cmyc] | 30 |
MOTIF[MA0148.1:FOXA1] | 3 |
MOTIF[MA0154.1:EBF] | 18 |
MOTIF[MA0159.1:RXR] | 2 |
MOTIF[MA0162.1:Egr1] | 99 |
NON_SYNONYMOUS_CODING | 10595 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 218 |
NON_SYNONYMOUS_START | 1 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 4 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 230 |
SPLICE_SITE_REGION | 55 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 234 |
START_GAINED | 462 |
START_LOST | 12 |
STOP_GAINED | 101 |
STOP_GAINED+SPLICE_SITE_REGION | 1 |
STOP_LOST | 20 |
STOP_LOST+SPLICE_SITE_REGION | 3 |
SYNONYMOUS_CODING | 11510 |
SYNONYMOUS_STOP | 13 |
None | 0 |
Quality | Value |
---|---|
Min | 10.0 |
Average | 378.338645550301 |
Max | 23695.3 |
Read Depth | Value |
---|---|
Min | 1 |
Average | 10.27564518628656 |
Max | 200 |
Type | Total Variants |
---|---|
None | 0 |