Name: snps raw MG15-000
Variants: 588200
Novel Variants: 47950 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 588200 149495 0/1 49 0/2 438546 1/1 73 1/2 37 2/2
Total Gene-associated SNVs 588200 149495 0/1 49 0/2 438546 1/1 73 1/2 37 2/2

Type Total Variants
32
MOTIF[MA0003.1:Ap2alpha]53
MOTIF[MA0005.1:MEF2C]1
MOTIF[MA0014.1:Pax5]6
MOTIF[MA0016.1:RXRA]5
MOTIF[MA0024.1:E2F1]18
MOTIF[MA0035.1:Gata1]2
MOTIF[MA0035.2:Gata1]3
MOTIF[MA0036.1:Gata2]4
MOTIF[MA0047.1:FOXA2]3
MOTIF[MA0047.2:FOXA2]6
MOTIF[MA0058.1:Max]33
MOTIF[MA0059.1:Cmyc]19
MOTIF[MA0062.1:Gabp]16
MOTIF[MA0062.2:Gabp]55
MOTIF[MA0065.1:PPARG]5
MOTIF[MA0065.2:PPARG]3
MOTIF[MA0074.1:RXRA]1
MOTIF[MA0079.1:SP1]34
MOTIF[MA0079.2:SP1]145
MOTIF[MA0080.1:PU1]6
MOTIF[MA0080.2:PU1]11
MOTIF[MA0083.1:Srf]4
MOTIF[MA0093.1:USF1]36
MOTIF[MA0095.1:Yy1]18
MOTIF[MA0099.1:Cfos]13
MOTIF[MA0099.2:AP1]14
MOTIF[MA0114.1:HNF4A]34
MOTIF[MA0138.2:Nrsf]34
MOTIF[MA0139.1:CTCF]379
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]31
MOTIF[MA0148.1:FOXA1]3
MOTIF[MA0154.1:EBF]15
MOTIF[MA0159.1:RXR]3
MOTIF[MA0162.1:Egr1]115
MOTIF[MA0239.1:Pax5]1
NON_SYNONYMOUS_CODING10536
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION246
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS240
SPLICE_SITE_REGION48
SPLICE_SITE_REGION+SYNONYMOUS_CODING226
START_GAINED440
START_LOST11
STOP_GAINED97
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST20
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11479
SYNONYMOUS_STOP12
None0

Type Total Variants
1894
MISSENSE10816
NONSENSE99
SILENT11717
None0

Type Total Variants
HIGH376
LOW12502
MODERATE10782
MODIFIER866
None0

Type Total Variants
.342402
LowQual245798

Quality Value
Min10.0
Average403.135834614447
Max23695.3

Read Depth Value
Min1
Average9.809121047262837
Max200

Type Total Variants
None0

Chromossome Total Variants
148793
1031250
1131304
1228153
1318058
1419573
1518923
1624324
1725658
1814473
1923655
245117
2015135
219384
2212951
333912
433087
529544
630371
731813
827204
924690
M32
X8519
Y2277