Name: mm171122md
Variants: 149798
Novel Variants: 2554 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 149798 88777 0/1 60795 1/1 226 1/2
Total Gene-associated SNVs 149798 88777 0/1 60795 1/1 226 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION107
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION1
CODON_CHANGE_PLUS_CODON_INSERTION70
CODON_DELETION37
CODON_DELETION+SPLICE_SITE_REGION2
CODON_INSERTION48
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT165
FRAME_SHIFT+SPLICE_SITE_REGION40
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED1
FRAME_SHIFT+STOP_LOST4
MOTIF[MA0003.1:Ap2alpha]30
MOTIF[MA0014.1:Pax5]7
MOTIF[MA0016.1:RXRA]6
MOTIF[MA0024.1:E2F1]7
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]22
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]5
MOTIF[MA0062.2:Gabp]32
MOTIF[MA0079.1:SP1]5
MOTIF[MA0079.2:SP1]25
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]6
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]4
MOTIF[MA0095.1:Yy1]12
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]7
MOTIF[MA0138.2:Nrsf]6
MOTIF[MA0139.1:CTCF]108
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]13
MOTIF[MA0154.1:EBF]7
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]41
NON_SYNONYMOUS_CODING12527
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION248
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS273
SPLICE_SITE_REGION39
SPLICE_SITE_REGION+SYNONYMOUS_CODING276
START_GAINED333
START_LOST13
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED134
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST26
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING12401
SYNONYMOUS_STOP17
TRANSCRIPT1
None0

Type Total Variants
1483
MISSENSE12819
NONSENSE137
SILENT12694
None0

Type Total Variants
HIGH669
LOW13216
MODERATE13041
MODIFIER207
None0

Type Total Variants
.142242
LowQual7556

Quality Value
Min10.2
Average858.188050574018
Max65422.19

Read Depth Value
Min1
Average50.24167211845285
Max4491

Type Total Variants
None0

Chromossome Total Variants
114619
106599
118320
128260
132827
145386
155509
166435
178548
182656
199642
210692
203771
212368
223617
38273
46089
56173
69006
77848
85144
96035
X1813
Y168