Name: mm170835gc
Variants: 150899
Novel Variants: 2249 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 150899 93225 0/1 57361 1/1 313 1/2
Total Gene-associated SNVs 150899 93225 0/1 57361 1/1 313 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION97
CODON_CHANGE_PLUS_CODON_INSERTION73
CODON_DELETION48
CODON_INSERTION65
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT158
FRAME_SHIFT+SPLICE_SITE_REGION41
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST2
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]25
MOTIF[MA0014.1:Pax5]7
MOTIF[MA0016.1:RXRA]5
MOTIF[MA0024.1:E2F1]6
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]16
MOTIF[MA0059.1:Cmyc]5
MOTIF[MA0062.1:Gabp]12
MOTIF[MA0062.2:Gabp]29
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0079.1:SP1]4
MOTIF[MA0079.2:SP1]21
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]4
MOTIF[MA0093.1:USF1]8
MOTIF[MA0095.1:Yy1]10
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]6
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]7
MOTIF[MA0139.1:CTCF]117
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]13
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]4
MOTIF[MA0162.1:Egr1]38
NON_SYNONYMOUS_CODING12592
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION260
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS269
SPLICE_SITE_REGION45
SPLICE_SITE_REGION+SYNONYMOUS_CODING273
START_GAINED353
START_LOST14
START_LOST+CODON_CHANGE_PLUS_CODON_DELETION1
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED124
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST30
STOP_LOST+SPLICE_SITE_REGION5
SYNONYMOUS_CODING12547
SYNONYMOUS_STOP10
TRANSCRIPT1
None0

Type Total Variants
1517
MISSENSE12903
NONSENSE127
SILENT12830
None0

Type Total Variants
HIGH658
LOW13380
MODERATE13136
MODIFIER203
None0

Type Total Variants
.144399
LowQual6500

Quality Value
Min10.2
Average873.615838341419
Max35753.29

Read Depth Value
Min1
Average53.65292679209272
Max3546

Type Total Variants
None0

Chromossome Total Variants
115652
106685
118375
127944
132915
145272
155227
166594
178352
182493
199125
210593
203865
212599
224189
38351
46030
56084
69032
77729
85253
96568
X1807
Y165