Name: t30541_annotated_calls
Variants: 168393
Novel Variants: 2467 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 168393 41433 0/1 41731 1/0 84841 1/1 194 1/2 194 2/1
Total Gene-associated SNVs 168393 41433 0/1 41731 1/0 84841 1/1 194 1/2 194 2/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION79
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION1
CODON_CHANGE_PLUS_CODON_INSERTION56
CODON_DELETION39
CODON_INSERTION41
CODON_INSERTION+SPLICE_SITE_REGION3
FRAME_SHIFT120
FRAME_SHIFT+SPLICE_SITE_REGION35
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_LOST4
MOTIF[MA0003.1:Ap2alpha]15
MOTIF[MA0014.1:Pax5]1
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]11
MOTIF[MA0035.1:Gata1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]15
MOTIF[MA0059.1:Cmyc]4
MOTIF[MA0062.1:Gabp]8
MOTIF[MA0062.2:Gabp]38
MOTIF[MA0079.1:SP1]5
MOTIF[MA0079.2:SP1]19
MOTIF[MA0080.1:PU1]7
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]8
MOTIF[MA0095.1:Yy1]13
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]3
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0114.1:HNF4A]4
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]9
MOTIF[MA0139.1:CTCF]101
MOTIF[MA0147.1:Cmyc]10
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]4
MOTIF[MA0159.1:RXR]3
MOTIF[MA0162.1:Egr1]42
MOTIF[MA0239.1:Pax5]1
NON_SYNONYMOUS_CODING9122
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION195
NON_SYNONYMOUS_START2
NON_SYNONYMOUS_START+SPLICE_SITE_REGION1
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS237
SPLICE_SITE_REGION84
SPLICE_SITE_REGION+SYNONYMOUS_CODING226
START_GAINED415
START_LOST11
STOP_GAINED70
STOP_GAINED+CODON_INSERTION2
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST17
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING10180
SYNONYMOUS_STOP9
None0

Type Total Variants
1462
MISSENSE9350
NONSENSE73
SILENT10415
None0

Type Total Variants
HIGH516
LOW11063
MODERATE9536
MODIFIER185
None0

Type Total Variants
ab377
badReads278
PASS166488
sb1077
sb;ab99
sb;ab;badReads6
sb;badReads68

Quality Value
Min5.0
Average146.111150701039
Max200.0

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
116657
108047
119504
129343
134216
145137
156130
166434
178721
183434
199352
212185
203813
212726
223429
39659
47651
57436
69479
78598
86284
97161
MT14
X2746
Y237