Name: h1esc_mtesr1 samtools indel
Variants: 569991
Novel Variants: 509138 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 569991 267438 0/1 249370 1/1 53183 1/2
Total Gene-associated SNVs 569991 267438 0/1 249370 1/1 53183 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION74
CODON_CHANGE_PLUS_CODON_INSERTION77
CODON_DELETION116
CODON_INSERTION102
FRAME_SHIFT159
FRAME_SHIFT+SPLICE_SITE_REGION45
FRAME_SHIFT+START_LOST1
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION2
FRAME_SHIFT+STOP_LOST5
GENE_FUSION1
MOTIF_DELETED14
MOTIF[MA0003.1:Ap2alpha]42
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0035.1:Gata1]1
MOTIF[MA0035.2:Gata1]4
MOTIF[MA0036.1:Gata2]5
MOTIF[MA0047.1:FOXA2]5
MOTIF[MA0047.2:FOXA2]2
MOTIF[MA0058.1:Max]25
MOTIF[MA0059.1:Cmyc]5
MOTIF[MA0062.1:Gabp]4
MOTIF[MA0062.2:Gabp]15
MOTIF[MA0065.1:PPARG]3
MOTIF[MA0079.1:SP1]21
MOTIF[MA0079.2:SP1]64
MOTIF[MA0080.2:PU1]1
MOTIF[MA0083.1:Srf]2
MOTIF[MA0093.1:USF1]5
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.1:Cfos]5
MOTIF[MA0099.2:AP1]3
MOTIF[MA0105.1:NFKB]2
MOTIF[MA0114.1:HNF4A]9
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]92
MOTIF[MA0140.1:Tal1]5
MOTIF[MA0147.1:Cmyc]10
MOTIF[MA0148.1:FOXA1]7
MOTIF[MA0154.1:EBF]5
MOTIF[MA0162.1:Egr1]79
PROTEIN_STRUCTURAL_INTERACTION_LOCUS1
SPLICE_SITE_REGION32
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION+CODON_INSERTION2
TRANSCRIPT14
None0

Type Total Variants
1090
None0

Type Total Variants
HIGH219
LOW486
MODERATE371
MODIFIER14
None0

Type Total Variants
PASS569991

Quality Value
Min20.0001
Average160.167536589175
Max228.0

Read Depth Value
Min1
Average19.582495162204314
Max221

Type Total Variants
None0

Chromossome Total Variants
144753
1027809
1127810
1228016
1322158
1418660
1516911
1616326
1716897
1816420
1914194
246320
2011887
219868
227697
338098
440072
534748
634917
732566
827778
922364
X13200
Y522