Name: snps raw-variants selected 3422_16
Variants: 204566
Novel Variants: 2762 (Not in latest DbSNP Build)

Type Total Variants
36
CODON_CHANGE_PLUS_CODON_DELETION135
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION1
CODON_CHANGE_PLUS_CODON_INSERTION74
CODON_DELETION45
CODON_DELETION+SPLICE_SITE_REGION2
CODON_INSERTION61
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT188
FRAME_SHIFT+SPLICE_SITE_REGION35
FRAME_SHIFT+START_LOST5
FRAME_SHIFT+STOP_GAINED6
FRAME_SHIFT+STOP_LOST2
GENE_FUSION_REVERESE1
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]12
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.2:FOXA2]2
MOTIF[MA0058.1:Max]17
MOTIF[MA0059.1:Cmyc]4
MOTIF[MA0062.1:Gabp]6
MOTIF[MA0062.2:Gabp]22
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]5
MOTIF[MA0079.2:SP1]23
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]9
MOTIF[MA0095.1:Yy1]9
MOTIF[MA0099.1:Cfos]4
MOTIF[MA0099.2:AP1]3
MOTIF[MA0114.1:HNF4A]13
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.2:Nrsf]7
MOTIF[MA0139.1:CTCF]108
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]9
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]6
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]28
NON_SYNONYMOUS_CODING10277
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION221
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS255
SPLICE_SITE_REGION54
SPLICE_SITE_REGION+SYNONYMOUS_CODING267
START_GAINED296
START_LOST20
START_LOST+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_GAINED76
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST29
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11282
SYNONYMOUS_STOP14
TRANSCRIPT1
None0

Type Total Variants
1511
MISSENSE10552
NONSENSE77
SILENT11563
None0

Type Total Variants
HIGH627
LOW12030
MODERATE10817
MODIFIER229
None0

Type Total Variants
PASS204566

Quality Value
Min50.01
Average2199.32972414709
Max85012.3

Read Depth Value
Min1
Average33.08566917278531
Max200

Type Total Variants
None0

Chromossome Total Variants
117796
109060
1110991
1210769
134524
147333
157415
168161
1710623
184134
1911848
215446
205624
214959
225003
310318
49572
59319
69280
711011
87149
98669
M36
X4552
Y974