Name: snps raw-variants selected 3405_16
Variants: 204281
Novel Variants: 2816 (Not in latest DbSNP Build)

Type Total Variants
36
CODON_CHANGE_PLUS_CODON_DELETION113
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION1
CODON_CHANGE_PLUS_CODON_INSERTION71
CODON_DELETION42
CODON_DELETION+SPLICE_SITE_REGION1
CODON_INSERTION59
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT184
FRAME_SHIFT+SPLICE_SITE_REGION37
FRAME_SHIFT+START_LOST5
FRAME_SHIFT+STOP_GAINED6
FRAME_SHIFT+STOP_LOST2
GENE_FUSION_REVERESE1
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]12
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.2:FOXA2]2
MOTIF[MA0058.1:Max]18
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]8
MOTIF[MA0062.2:Gabp]29
MOTIF[MA0065.1:PPARG]3
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]6
MOTIF[MA0079.2:SP1]21
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]2
MOTIF[MA0093.1:USF1]9
MOTIF[MA0095.1:Yy1]9
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]13
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]8
MOTIF[MA0139.1:CTCF]114
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]10
MOTIF[MA0148.1:FOXA1]3
MOTIF[MA0154.1:EBF]5
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]31
NON_SYNONYMOUS_CODING10030
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION225
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS258
SPLICE_SITE_REGION49
SPLICE_SITE_REGION+SYNONYMOUS_CODING250
START_GAINED279
START_LOST17
START_LOST+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_GAINED75
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST28
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11264
SYNONYMOUS_STOP12
TRANSCRIPT1
None0

Type Total Variants
1476
MISSENSE10303
NONSENSE76
SILENT11526
None0

Type Total Variants
HIGH621
LOW11982
MODERATE10543
MODIFIER235
None0

Type Total Variants
PASS204281

Quality Value
Min50.01
Average2207.52187486788
Max85012.3

Read Depth Value
Min1
Average35.14362569206143
Max200

Type Total Variants
None0

Chromossome Total Variants
117123
109397
1111139
1210303
134611
146666
157679
168382
1710279
184072
1912284
215670
205788
214711
224981
310199
49454
59321
69381
711028
87473
98815
M36
X4520
Y969