Name: snps raw-variants selected 3404_16
Variants: 202156
Novel Variants: 2697 (Not in latest DbSNP Build)

Type Total Variants
37
CODON_CHANGE_PLUS_CODON_DELETION127
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION1
CODON_CHANGE_PLUS_CODON_INSERTION70
CODON_DELETION43
CODON_DELETION+SPLICE_SITE_REGION1
CODON_INSERTION59
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT188
FRAME_SHIFT+SPLICE_SITE_REGION37
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED6
FRAME_SHIFT+STOP_LOST2
GENE_FUSION_REVERESE1
MOTIF[MA0003.1:Ap2alpha]10
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]4
MOTIF[MA0035.1:Gata1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.2:FOXA2]2
MOTIF[MA0058.1:Max]15
MOTIF[MA0059.1:Cmyc]4
MOTIF[MA0062.1:Gabp]8
MOTIF[MA0062.2:Gabp]28
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]7
MOTIF[MA0079.2:SP1]19
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]10
MOTIF[MA0095.1:Yy1]11
MOTIF[MA0099.1:Cfos]4
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]13
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.1:Nrsf]2
MOTIF[MA0138.2:Nrsf]8
MOTIF[MA0139.1:CTCF]109
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]10
MOTIF[MA0148.1:FOXA1]3
MOTIF[MA0154.1:EBF]7
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]34
NON_SYNONYMOUS_CODING10235
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION227
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS261
SPLICE_SITE_REGION58
SPLICE_SITE_REGION+SYNONYMOUS_CODING267
START_GAINED268
START_LOST15
START_LOST+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_GAINED73
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST30
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11261
SYNONYMOUS_STOP14
TRANSCRIPT1
None0

Type Total Variants
1494
MISSENSE10511
NONSENSE75
SILENT11542
None0

Type Total Variants
HIGH624
LOW11997
MODERATE10764
MODIFIER237
None0

Type Total Variants
PASS202156

Quality Value
Min50.0
Average2164.49284201255
Max85012.3

Read Depth Value
Min1
Average32.18494627911118
Max200

Type Total Variants
None0

Chromossome Total Variants
117577
109119
1110954
1210442
134632
147117
157302
168050
1710679
184057
1912097
215459
205658
214808
224825
310319
49276
58938
69389
710855
87480
98854
M37
X3282
Y950