Name: snps raw-variants selected 3403_16
Variants: 206102
Novel Variants: 2701 (Not in latest DbSNP Build)

Type Total Variants
36
CODON_CHANGE_PLUS_CODON_DELETION118
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION1
CODON_CHANGE_PLUS_CODON_INSERTION71
CODON_DELETION47
CODON_DELETION+SPLICE_SITE_REGION2
CODON_INSERTION64
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT185
FRAME_SHIFT+SPLICE_SITE_REGION35
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST1
GENE_FUSION1
GENE_FUSION_REVERESE1
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]13
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]2
MOTIF[MA0058.1:Max]18
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]7
MOTIF[MA0062.2:Gabp]25
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]7
MOTIF[MA0079.2:SP1]21
MOTIF[MA0080.2:PU1]2
MOTIF[MA0093.1:USF1]10
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]3
MOTIF[MA0114.1:HNF4A]12
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]6
MOTIF[MA0139.1:CTCF]127
MOTIF[MA0147.1:Cmyc]8
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]8
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]21
NON_SYNONYMOUS_CODING10380
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION233
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS268
SPLICE_SITE_REGION48
SPLICE_SITE_REGION+SYNONYMOUS_CODING261
START_GAINED281
START_LOST17
STOP_GAINED80
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST26
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11493
SYNONYMOUS_STOP8
TRANSCRIPT1
None0

Type Total Variants
1495
MISSENSE10658
NONSENSE83
SILENT11762
None0

Type Total Variants
HIGH632
LOW12212
MODERATE10917
MODIFIER237
None0

Type Total Variants
PASS206102

Quality Value
Min50.01
Average2138.37775120993
Max85012.3

Read Depth Value
Min1
Average33.86135505720468
Max200

Type Total Variants
None0

Chromossome Total Variants
117606
109342
1111159
1210942
134814
147492
157566
168270
1710773
184169
1912206
215597
205495
214770
224839
310619
49385
59403
69475
711132
87265
98605
M36
X4161
Y981