Name: cds 3404_16
Variants: 21975
Novel Variants: 179 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 21975 213 0|1 13875 0/1 7 0/2 4 1 8 1|0 7845 1/1 19 1/2 2 1/3 2 2/2
Total Gene-associated SNVs 21975 213 0|1 13875 0/1 7 0/2 4 1 8 1|0 7845 1/1 19 1/2 2 1/3 2 2/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION99
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION1
CODON_CHANGE_PLUS_CODON_INSERTION65
CODON_DELETION44
CODON_INSERTION60
FRAME_SHIFT152
FRAME_SHIFT+SPLICE_SITE_REGION30
FRAME_SHIFT+START_LOST2
FRAME_SHIFT+STOP_GAINED5
MOTIF[MA0079.1:SP1]1
MOTIF[MA0095.1:Yy1]1
MOTIF[MA0139.1:CTCF]1
MOTIF[MA0162.1:Egr1]1
NON_SYNONYMOUS_CODING9313
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION195
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS257
SPLICE_SITE_REGION3
SPLICE_SITE_REGION+SYNONYMOUS_CODING247
START_GAINED3
START_LOST11
START_LOST+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_GAINED59
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST13
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING10517
None0

Type Total Variants
728
MISSENSE9535
NONSENSE60
SILENT10764
None0

Type Total Variants
HIGH534
LOW10775
MODERATE9777
MODIFIER1
None0

Type Total Variants
PASS21975

Quality Value
Min16.0
Average1243.11085324232
Max3070.0

Read Depth Value
Min0
Average55.35845278725825
Max580

Type Total Variants
None0

Chromossome Total Variants
12259
10848
111602
121068
13352
14717
15684
16903
171318
18408
191757
21561
20575
21302
22532
31084
4880
51060
6950
71162
8760
9838
X346
Y9